| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,284,491 – 5,284,609 |
| Length | 118 |
| Max. P | 0.609679 |
| Location | 5,284,491 – 5,284,609 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.10 |
| Mean single sequence MFE | -28.93 |
| Consensus MFE | -18.49 |
| Energy contribution | -19.83 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5284491 118 - 22224390 UUUAUCCUUUAUCCAGCGACUGUAUUGAUUACCAAUUUGUUGCGGCUGCCACUGCAGCUUUUAAUUGAAUCGAAGAGACUUAUCGACGACAGGAUUAGAAACUGUGCAGCCAUAGAAA ...............(((((...((((.....))))..)))))((((((....((((.((((((((...(((..((......))..)))...)))))))).))))))))))....... ( -33.50) >DroSec_CAF1 21423 118 - 1 UUUAUCCUUUAUCCUGCGACUGUAUUGAUUACCAAUUUGUUGCGGCUGCCACUGCUGCUUUUAAUUGAAUCAAAGAGACUUAUCGUCGGCAGGAUUAGAAGAUGUGCAGCCAUAGAAA ..((((.(((((((((((((....((((((..(((((....(((((.......)))))....))))))))))).((......))))).)))))).)))).)))).............. ( -32.10) >DroEre_CAF1 21347 93 - 1 UU-------UAUCCUGUGACUGUAUUGAUUACCAAUUUGUUGCGACUGCCACUGCAGCUUUUAAUUGAAUCGAAGAGACUUAUCGUUGGCAG-----------------GACU-GAAA ((-------(((((((((((....((((((..(((((.((((((........))))))....))))))))))).((......))))).))))-----------------)).)-))). ( -21.20) >consensus UUUAUCCUUUAUCCUGCGACUGUAUUGAUUACCAAUUUGUUGCGGCUGCCACUGCAGCUUUUAAUUGAAUCGAAGAGACUUAUCGUCGGCAGGAUUAGAA__UGUGCAGCCAUAGAAA ...........(((((((((....((((((..(((((.(((((((......)))))))....))))))))))).((......)))))).)))))........................ (-18.49 = -19.83 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:40 2006