Locus 191

Sequence ID	X_DroMel_CAF1
Location	659,787 – 659,903
Length	116
Max. P	0.979680

overview

Window 9

Location	659,787 – 659,903
Length	116
Sequences	4
Columns	116
Reading direction	forward
Mean pairwise identity	81.61
Mean single sequence MFE	-46.75
Consensus MFE	-36.11
Energy contribution	-35.67
Covariance contribution	-0.44
Combinations/Pair	1.41
Mean z-score	-2.38
Structure conservation index	0.77
SVM decision value	1.84
SVM RNA-class probability	0.979680
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 659787 116 + 22224390
CUAAAUUCAUCUCUGCACGCACCUUGCGGAGAGCAAGGCAGUCAAUGAUGCUAUGACUCUGCCAAGUGACCUCCAGGUCGGCGGGGAUUGGUGUUCCCUCUGACGCCAAGCAGCCC
............((((.....((((((((((((((.((((........)))).)).)))).))...(((((....))))))))))).((((((((......))))))))))))... ( -43.20)
>DroSec_CAF1 9862 116 + 1
CAAAAUUCAUCUCAGCACGCACUUUGCGGAGAUCAAGGCAGUCAAUGCUGCUAUGAUUCUGCCAGGCGACCUCCAUGUCGGCGGGGAUGGGUUUCCCUUCUGACGCUGAGCAGACC
......((..((((((.(((.((..((((((.(((.((((((....)))))).))))))))).)))))........(((((.(((((......))))).)))))))))))..)).. ( -48.70)
>DroSim_CAF1 5493 116 + 1
CCAAAUUCAUCUCAGCACGCACUUUGCGGAGAUCAAGGCAGUCAAUGCUGCUAUGACUCUGCCAGGCGACCUCCAGGUCAGCGGGGAUGGGUUUCCCUUCUGACGCUGAGCAGACC
......((..((((((.(((.((..((((((.(((.((((((....)))))).))))))))).)))))........(((((.(((((......))))).)))))))))))..)).. ( -51.70)
>DroEre_CAF1 5131 116 + 1
CGAAGUCCAUCUGACCACGCACCCUGCGGGGAUCACGGCAGCCGGUGAGGCUAGGACUUUGCCAGAUGACCUCCAGCUUAGCCGGGAUUGGUUUCUCGUCUGGCGCUUGGUAGUCC
((((((((...(((((.(((.....))).)).)))....((((.....)))).))))))))......(((..(((((((((.(((((......))))).)))).)).)))..))). ( -43.40)
>consensus
CAAAAUUCAUCUCAGCACGCACCUUGCGGAGAUCAAGGCAGUCAAUGAUGCUAUGACUCUGCCAGGCGACCUCCAGGUCAGCGGGGAUGGGUUUCCCUUCUGACGCUGAGCAGACC
..........((((((.(((.....((((((.(((.((((((....)))))).)))))))))...)))........(((((.(((((......))))).)))))))))))...... (-36.11 = -35.67 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:36 2006