Locus 1907

Sequence ID X_DroMel_CAF1
Location 5,281,906 – 5,282,024
Length 118
Max. P 0.596638
window3105

overview

Window 5

Location 5,281,906 – 5,282,024
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 85.75
Mean single sequence MFE -18.87
Consensus MFE -16.32
Energy contribution -16.65
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.87
SVM decision value 0.13
SVM RNA-class probability 0.596638
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5281906 118 + 22224390
ACGACAGGAAGUGAAGUUGUCGAAAGUGAAUUUGCAUAAACGUAUGAAAUUUUAAUAUUUACGACAA-AUUUUCAACCACUUCCCAGCCAGCUACCCAUCCAUCCAG-CACACACACACA
......(((((((...((((((.((((((((((.((((....))))))))))....)))).))))))-.........)))))))......(((............))-)........... ( -19.80)
>DroSec_CAF1 18832 119 + 1
ACGACAGGAAAUGAAGUUGUCGAAAGUGAAUUUGCAUAAACGUAUGAAAUUUUAAUAUUUACGACAA-AUUUUCAACCACUUCCCAGCCAGCUACCCAUCCAUCCAUCCACACACACACA
......(((..((((.((((((.((((((((((.((((....))))))))))....)))).))))))-...))))..........((....)).....)))................... ( -16.10)
>DroYak_CAF1 15096 108 + 1
ACGACAGGAAGUGAAGUUGUCGAAAGUGAAUUUGCAUAAACGUAUGAAAUUUUAAUAUUUACGACAACAUUUUCAACCACUUCCCAAUCCCCUACUCCC----------CCCACCACA--
......(((((((..(((((((.((((((((((.((((....))))))))))....)))).))))))).........)))))))...............----------.........-- ( -20.70)
>consensus
ACGACAGGAAGUGAAGUUGUCGAAAGUGAAUUUGCAUAAACGUAUGAAAUUUUAAUAUUUACGACAA_AUUUUCAACCACUUCCCAGCCAGCUACCCAUCCAUCCA__CACACACACACA
......(((((((...((((((.((((((((((.((((....))))))))))....)))).))))))..........))))))).................................... (-16.32 = -16.65 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:37 2006