Locus 190

Sequence ID X_DroMel_CAF1
Location 659,430 – 659,550
Length 120
Max. P 0.601144
window298

overview

Window 8

Location 659,430 – 659,550
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -40.83
Consensus MFE -30.41
Energy contribution -31.63
Covariance contribution 1.22
Combinations/Pair 1.03
Mean z-score -2.36
Structure conservation index 0.74
SVM decision value 0.14
SVM RNA-class probability 0.601144
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 659430 120 + 22224390
UAGUCAUUUUCCUCGCGGAGGUUGCCUUGUCAAUAGUCAAUUUCCUCGCGGAGGUUGCCUUGUCAAUAGUCAAUUUCCUCGCGGAGGUUCCCUUGUCAAUAGUCAAUUUCCUCGCGUUGG
..........((.(((((((((((.((((.((..((..(((((((.((.((((((((.((.......)).)))))))).)).)))))))..)))).))..)).))))))))..)))..)) ( -35.90)
>DroSec_CAF1 9505 120 + 1
UAGUCAAUUUCCUUGCGGAGGUUGCCUUGUCAAUGGUCAAGUUCCUCGCGGAGUUUGCCUUGUCAAAGCUCAAAUUCCUCGCGGAGGUUGCCUUGUCAAUGAUCAAGAUCUUCGCGGAGU
........((((..(((((((((.(.(((.(((.((.(((.((((.((.((((((((.(((....)))..)))))))).)).)))).)))))))).))).).....))))))))))))). ( -43.30)
>DroSim_CAF1 5136 120 + 1
UAGUCAAUUUCCUUGCGGAGGUUGCCUUGUCAAUGGUCAAGUUCCUCGCGGAGUUUGCCUUGUCAAAGCUCAAAUUCCUCGCGGAGGUUGCCUUGUCAAUGAUCAAGAUCUUCGCGGAGU
........((((..(((((((((.(.(((.(((.((.(((.((((.((.((((((((.(((....)))..)))))))).)).)))).)))))))).))).).....))))))))))))). ( -43.30)
>consensus
UAGUCAAUUUCCUUGCGGAGGUUGCCUUGUCAAUGGUCAAGUUCCUCGCGGAGUUUGCCUUGUCAAAGCUCAAAUUCCUCGCGGAGGUUGCCUUGUCAAUGAUCAAGAUCUUCGCGGAGU
..(.((((((((....)))))))).)(((.(((.((.((((((((....))))))))))))).)))..........(..(((((((((...((((........)))))))))))))..). (-30.41 = -31.63 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:35 2006