Locus 1899

Sequence ID X_DroMel_CAF1
Location 5,270,663 – 5,270,766
Length 103
Max. P 0.726685
window3088

overview

Window 8

Location 5,270,663 – 5,270,766
Length 103
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 79.88
Mean single sequence MFE -48.20
Consensus MFE -34.90
Energy contribution -36.10
Covariance contribution 1.20
Combinations/Pair 1.30
Mean z-score -1.39
Structure conservation index 0.72
SVM decision value 0.41
SVM RNA-class probability 0.726685
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5270663 103 - 22224390
CCUCGCACUGGUAGCGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUUUGCGUGCGCACUCGCUUCGUACGGGCC------UGGGCCUGAGCCAUGGCUUGAGCUUG------
.((((.(((((.(((((.(((....))).)))))))))).)))).((((.((((.(((....)))..))))((((((------..(((....)))..))))))))))..------ ( -46.70)
>DroSec_CAF1 7601 103 - 1
CCUCGCACUGGUAGCGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUCUGCGUGCGCACUCGCUUCGUACGGGCC------UGGGCCUGUGCCAUGGCCUGGGACUG------
.((((.(((((.(((((.(((....))).)))))))))).))))..((((((((.(((....)))..)))).))))(------..((((........))))..).....------ ( -49.10)
>DroSim_CAF1 2836 103 - 1
CCUCGCACUGGUAGCGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUCUGCGUGCGCACUCGCUUCGUACGGGCC------UGGGCCUGUGCCAUGGCCUGGGCCUG------
.((((.(((((.(((((.(((....))).)))))))))).))))......((((.(((....)))..))))((((((------..((((........))))..))))))------ ( -55.30)
>DroYak_CAF1 2949 109 - 1
CCUCGCACUGGUAACGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUCUGCGUGCGCACUCGCUUCGCACGGGCC------UGGGCUUGCGCCAAGGCUUGGGCCUGGCUCUG
.((((.(((((...(((.(((....))).)))..))))).)))).(((..((((.(((....)))..))))((((((------..(((((......)))))..)))))))))... ( -51.90)
>DroMoj_CAF1 3700 95 - 1
CCUCGCACUGAUAGCGCGGCGCAAUCGUAGUGCUCCAGUCCGAAUAGCUUUGGGUGCGCACACGCUUCGAGGGCGCCGCAUUCUUGGCCUGCUCC--------------------
....((((..(.((.(((((((..(((..((((..((.((((((....)))))))).))))......)))..))))))).)).)..)..)))...-------------------- ( -33.30)
>DroAna_CAF1 2836 108 - 1
CCUCGCAUUGGUAGCGCGGGGCAAUGGUGGUGCUCCAGUCUGAGUAGCUCUGGGUGCGCACUCGUUUCGCCCUGGCG------CUGGCCUGGGCCUGGGCUUGGGCCUGGGUGA-
..((((......((((((((((((((((((..(.((((.((....))..)))))..).))).))))..))))).)))------))((((..(((....)))..))))...))))- ( -52.90)
>consensus
CCUCGCACUGGUAGCGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUCUGCGUGCGCACUCGCUUCGUACGGGCC______UGGGCCUGCGCCAUGGCUUGGGCCUG______
.((((.(((((.(((((.(((....))).)))))))))).))))..((((.....(((....)))...(((((((((........)))))))))........))))......... (-34.90 = -36.10 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:23 2006