Locus 1895

Sequence ID	X_DroMel_CAF1
Location	5,261,261 – 5,261,368
Length	107
Max. P	0.947051

overview

Window 9

Location	5,261,261 – 5,261,368
Length	107
Sequences	5
Columns	107
Reading direction	forward
Mean pairwise identity	97.01
Mean single sequence MFE	-20.08
Consensus MFE	-18.52
Energy contribution	-18.52
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.20
Structure conservation index	0.92
SVM decision value	0.14
SVM RNA-class probability	0.602774
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5261261 107 + 22224390
GUGUUAACCACUUAGAGAAUUUGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU
(((((..((...((((((...........))))))(((.....)))))...))))).........................((((.(((((....))))).)))).. ( -18.70)
>DroSec_CAF1 16921 107 + 1
GUGUCAACCACUUAGAGAAUUUGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU
(((.....))).((((((...........)))))).((((((........)))))).........................((((.(((((....))))).)))).. ( -18.60)
>DroSim_CAF1 16579 107 + 1
GUGUCAACCACUUAGAGAAUUUGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU
(((.....))).((((((...........)))))).((((((........)))))).........................((((.(((((....))))).)))).. ( -18.60)
>DroEre_CAF1 17685 107 + 1
GUGUCAACCACUUAGAGAAUUAGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU
(((.....))).((((((.(((....))))))))).((((((........)))))).........................((((.(((((....))))).)))).. ( -21.90)
>DroYak_CAF1 17570 107 + 1
GUGUUAACCACUUAGAGAGUUAGAAAUAGUCUCUGCGUAUUCAACGAAAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGACAUCUAAUCAGCUAU
(((.....))).((((((.(((....))))))))).((((((..(....))))))).........................((((.(((((....))))).)))).. ( -22.60)
>consensus
GUGUCAACCACUUAGAGAAUUUGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU
(((.....))).((((((...........)))))).((((((........)))))).........................((((.(((((....))))).)))).. (-18.52 = -18.52 +  -0.00)

alignment

secondary structure

dotplot

Window 0

Location	5,261,261 – 5,261,368
Length	107
Sequences	5
Columns	107
Reading direction	reverse
Mean pairwise identity	97.01
Mean single sequence MFE	-25.32
Consensus MFE	-25.02
Energy contribution	-24.86
Covariance contribution	-0.16
Combinations/Pair	1.03
Mean z-score	-1.40
Structure conservation index	0.99
SVM decision value	1.37
SVM RNA-class probability	0.947051
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5261261 107 - 22224390
AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCAAAUUCUCUAAGUGGUUAACAC
.(((((((((((....)))))))))))....................((.((.....)).))(((((.(((..(((((...........)))))..))).))))).. ( -25.60)
>DroSec_CAF1 16921 107 - 1
AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCAAAUUCUCUAAGUGGUUGACAC
.(((((((((((....)))))))))))......((((...((((.((((.((.....)).)))).))))...))))((((((((..........))))))))..... ( -25.40)
>DroSim_CAF1 16579 107 - 1
AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCAAAUUCUCUAAGUGGUUGACAC
.(((((((((((....)))))))))))......((((...((((.((((.((.....)).)))).))))...))))((((((((..........))))))))..... ( -25.40)
>DroEre_CAF1 17685 107 - 1
AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCUAAUUCUCUAAGUGGUUGACAC
.(((((((((((....)))))))))))......((((...((((.((((.((.....)).)))).))))...))))((((((((..........))))))))..... ( -25.40)
>DroYak_CAF1 17570 107 - 1
AUAGCUGAUUAGAUGUCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUUUCGUUGAAUACGCAGAGACUAUUUCUAACUCUCUAAGUGGUUAACAC
.(((((((((((....))))))))))).......(((((.((((.......((((((........))))))..(((((...........))))))))).)))))... ( -24.80)
>consensus
AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCAAAUUCUCUAAGUGGUUGACAC
.(((((((((((....)))))))))))......((((...((((.((((.((.....)).)))).))))...))))((((((((..........))))))))..... (-25.02 = -24.86 +  -0.16)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:16 2006