Locus 1893

Sequence ID X_DroMel_CAF1
Location 5,255,729 – 5,255,819
Length 90
Max. P 0.637519
window3076

overview

Window 6

Location 5,255,729 – 5,255,819
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 90.14
Mean single sequence MFE -19.82
Consensus MFE -16.02
Energy contribution -15.86
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.46
Structure conservation index 0.81
SVM decision value 0.21
SVM RNA-class probability 0.637519
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5255729 90 + 22224390
GAUGCAGCAUUGGUGGCUCCAUUUCCACUUCCAUUUGAGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUCUAGCCACUUGU
((.(((((...(((((........)))))((.....)))))))...))..((((((((..................))).)))))..... ( -18.07)
>DroSec_CAF1 11579 84 + 1
GAUGCAGCAUUGGUGGCUCCAUU------UCCAUUUGGGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUCUAGCCACUUGU
..........(((..((.(((..------......)))))..)))..(((((((((((..................))).))))).))). ( -20.17)
>DroSim_CAF1 11209 90 + 1
GAUGCAGCAUUGGUGGCUCCAUUUCCAUUUCCAUUUGGGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUCUAGCCACUUGU
((.(((((..(((.....)))...(((........))))))))...))..((((((((..................))).)))))..... ( -19.27)
>DroEre_CAF1 11956 84 + 1
GAUGCAGCAUUGGUGGUUCCAUU------UCCAUUCGCGCUGCCAUUUGAUGGCUGAACUCCUUUCAAUUCCAUUAGUGCAACCACUUGU
......((((((((((.......------............(((((...)))))((((.....))))...)))))))))).......... ( -19.10)
>DroYak_CAF1 12040 84 + 1
GAUGCAGCAUUGGUGGUUCCAUU------UCCAUUGGCGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUGUAUCCACUUGU
(((((((...(((..((.(((..------.....))).))..)))...(((((.((((.....))))...))))).)))))))....... ( -22.50)
>consensus
GAUGCAGCAUUGGUGGCUCCAUU______UCCAUUUGCGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUCUAGCCACUUGU
((.(((((.(..((((..............))))..).)))))...))(((((.((((.....))))...)))))............... (-16.02 = -15.86 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:12 2006