Locus 1892

Sequence ID X_DroMel_CAF1
Location 5,247,690 – 5,247,793
Length 103
Max. P 0.733071
window3075

overview

Window 5

Location 5,247,690 – 5,247,793
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 98.64
Mean single sequence MFE -14.84
Consensus MFE -14.36
Energy contribution -14.56
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.97
SVM decision value 0.43
SVM RNA-class probability 0.733071
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5247690 103 + 22224390
ACCCUUAAACAAAUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAUUAACA
.............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... ( -15.20)
>DroSec_CAF1 3791 103 + 1
ACCCUUAAACAAGUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA
.............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... ( -15.10)
>DroSim_CAF1 3426 103 + 1
ACCCUUAAACAAGUGUGUGUAUACCUAUUUAUAAUAUCGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA
.............((((.(((...((((((........(((..((((........))))..)))..(((....))).))))))...))))))).......... ( -13.50)
>DroEre_CAF1 3869 103 + 1
ACCCUUAAACAAAUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA
.............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... ( -15.20)
>DroYak_CAF1 3921 103 + 1
ACCCUUAAACAAAUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA
.............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... ( -15.20)
>consensus
ACCCUUAAACAAAUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA
.............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... (-14.36 = -14.56 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:12 2006