| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,243,404 – 5,243,507 |
| Length | 103 |
| Max. P | 0.769311 |
| Location | 5,243,404 – 5,243,507 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.33 |
| Mean single sequence MFE | -22.56 |
| Consensus MFE | -13.92 |
| Energy contribution | -13.04 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.769311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5243404 103 - 22224390 AUA----AAAUAACUCUAACAAAACAAGCGA--------UUAGGAAAUUGAUGUAUCGGAAACAUCGAUGACUA---AGCUAAGUAAGUUAUCGAUCCGUGUACGAUUAUCAAAGUUC ...----........................--------...(((..((((((.((((...((((((((((((.---.........))))))))))..))...))))))))))..))) ( -20.80) >DroSec_CAF1 16386 107 - 1 AUA----AAAUAACUCUUACAAAACAAGCGACAAGCA-AUUUGGAAAAUUGUGUAUCGGAAACAUCGCUGACUA------CAAGUAAGUUAUCGAUUCGUGUACGAUUAUCAAAGUUC ...----....(((((((((......(((((...(((-(((.....)))))).....(....).))))).....------...))))).....((((((....)))..)))..)))). ( -17.34) >DroEre_CAF1 16488 117 - 1 CAUACAUACAUAAUUUCCACAAAAUUAACGAUUAACA-AUAUGGAUAUUUGUGUAUCGCAAACAUCGAUGGCUAUCGAUGCGAGUAAGCUAUCGAUUCGUGUGCAAUUAUCAAAGUUC .....((((((((..((((.....(((.....)))..-...))))...)))))))).(((.((((((((((((.(((...)))...))))))))))..)).))).............. ( -27.20) >DroYak_CAF1 16771 108 - 1 UUA----AAAUAAGUUCCACAAAAUUAACGAUUAACAAAUAUGGAAAUUUGUGUAUCGGAAACAUCGAUGGCUA------CGAGUAAGCUAUCGGUUCGUGUGUGAUUAUCAAAGUAC ...----.....(((..((((.......((((..((((((......))))))..)))).....((((((((((.------......))))))))))...))))..))).......... ( -24.90) >consensus AUA____AAAUAACUCCCACAAAACAAACGAUUAACA_AUAUGGAAAUUUGUGUAUCGGAAACAUCGAUGACUA______CAAGUAAGCUAUCGAUUCGUGUACGAUUAUCAAAGUUC .........((((.((.((((....................................(....)((((((((((.............))))))))))...)))).))))))........ (-13.92 = -13.04 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:08 2006