Locus 1887

Sequence ID X_DroMel_CAF1
Location 5,232,472 – 5,232,582
Length 110
Max. P 0.889934
window3065

overview

Window 5

Location 5,232,472 – 5,232,582
Length 110
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 97.54
Mean single sequence MFE -20.98
Consensus MFE -20.10
Energy contribution -20.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.96
SVM decision value 0.96
SVM RNA-class probability 0.889934
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5232472 110 - 22224390
GAAUAAUAAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUAAUAAUACUCCUUUAUCCUCUUUCU
...........(...(((.(((((((((......((((..........(((....)))))))....))))))))).)))...)........................... ( -20.10)
>DroSec_CAF1 8800 107 - 1
GAAUAAUAAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUA---AUACUCCUUUAUCCUCUUUCU
...........(...(((.(((((((((......((((..........(((....)))))))....))))))))).)))...)...---..................... ( -20.10)
>DroEre_CAF1 8849 107 - 1
GAAUAAUUAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUA---AUACUCCUUUAUCCUCUUUCU
.....(((((((...(((.(((((((((......((((..........(((....)))))))....))))))))).))).)).)))---))................... ( -22.00)
>DroYak_CAF1 9059 107 - 1
GAAUAAUUAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUU---AUACUCCUUUAUCCUCUUUCU
.......((((((..(((.(((((((((......((((..........(((....)))))))....))))))))).)))....)))---))).................. ( -21.70)
>consensus
GAAUAAUAAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUA___AUACUCCUUUAUCCUCUUUCU
...........(...(((.(((((((((......((((..........(((....)))))))....))))))))).)))...)........................... (-20.10 = -20.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:03 2006