Locus 1882

Sequence ID X_DroMel_CAF1
Location 5,218,641 – 5,218,741
Length 100
Max. P 0.995982
window3055

overview

Window 5

Location 5,218,641 – 5,218,741
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 88.84
Mean single sequence MFE -23.09
Consensus MFE -18.00
Energy contribution -18.68
Covariance contribution 0.68
Combinations/Pair 1.09
Mean z-score -3.23
Structure conservation index 0.78
SVM decision value 2.64
SVM RNA-class probability 0.995982
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5218641 100 - 22224390
AGAGGCACUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGCCAGUAAACACGACUCAAAACACGUUUCCCAGCCCUCGCCUUCACAAUC
.(((((...((((((((((((((....)))))))).))))))........((..(.((((..............)))).)..))....)))))....... ( -23.34)
>DroSec_CAF1 38518 100 - 1
AGAGGCACUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGCCAGUAAAUACGACUCAAAACACGAUUCCCAGCCCUCGCCUUCACAAUC
.(((((...((((((((((((((....)))))))).))))))....................((.((.......)).)).........)))))....... ( -22.50)
>DroSim_CAF1 32258 100 - 1
AGAGGCACUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGCCAGUAAACACGACUCAAAACACGAUUCCCAGCCCUCGCCUUCACAAUC
.(((((...((((((((((((((....)))))))).))))))....................((.((.......)).)).........)))))....... ( -22.50)
>DroEre_CAF1 42132 94 - 1
AGAGGCACUGGAAAUUCCUUGAGCCCCUUCAAGGACAUUGCCUAAUUCUUGGCAGUAAACACGACUCAAAACACGAUUCCC------AGCCUUUACAAUC
((((((...((((..((((((((....)))))))).((((((........))))))....................)))).------.))))))...... ( -27.50)
>DroYak_CAF1 39373 90 - 1
-----UCGUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGGCAGCAAACACGACUCUAAACACGAUUCCC-----UUGCCUACACAAUC
-----..((((((((((((((((....)))))))).))))))........(((((......((..........))......-----)))))...)).... ( -19.60)
>consensus
AGAGGCACUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGCCAGUAAACACGACUCAAAACACGAUUCCCAGCCCUCGCCUUCACAAUC
.(((((...((((((((((((((....)))))))).))))))....((.((........)).))........................)))))....... (-18.00 = -18.68 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:53 2006