| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,203,397 – 5,203,509 |
| Length | 112 |
| Max. P | 0.894928 |
| Location | 5,203,397 – 5,203,509 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.45 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -7.68 |
| Energy contribution | -10.64 |
| Covariance contribution | 2.96 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5203397 112 + 22224390 UAAUAAGUAAAACUGCUUGCCCAAAUAGGCAAACAAAU---UUGGAUUCCUUAAAAGGAAUCCGCCUUUCUUUGGAGUCCCAAAACCACUUU-UUGGAUCUUGGUGG--AGCAGAGCA ............(((((..((((((.(((((((....)---))((((((((....))))))))))))...))))(((..((((((.....))-))))..)))))..)--.)))).... ( -34.40) >DroSec_CAF1 24059 111 + 1 UAAUAAGUAAAACAGC-UGCCCAAAUAGGCAAAAGAAU---UUGGAUUCCUCA-AAGGAAGCCGCCUUU-UUUGGAGUCCCAAAACAACUUU-UCGGAUCUUGGAGGAGAGCAGAGCA ..............((-((((......)))........---..((.((((...-..)))).))((((((-((..(..(((.((((....)))-).)))..)..)))))).))..))). ( -28.90) >DroSim_CAF1 17716 111 + 1 UAAUAAGUAAAACAGC-UGCCCAAAUAGGCAAAACAAU---UUGGAUUCCUCA-AAGGAAGCCGCCUUU-UUUGGAGUCCCAAAACAACUUU-UCGGAUCUUGGAGGAGAGCAGAGCA ..............((-((((......)))........---..((.((((...-..)))).))((((((-((..(..(((.((((....)))-).)))..)..)))))).))..))). ( -28.90) >DroEre_CAF1 26831 104 + 1 UAAUAAGUAGAACAGC-C-CCGAAAUAGGAUAAAGAAU--------UCCCUCA-AAGGCUUCUGGCUUC-UUUGGGGUCGUAAAACAACUUUUUUGGAUCUUGGAGG--AGCAGAGCA .......((((..(((-(-........(((........--------)))....-..))))))))(((((-((..(((((.(((((......))))))))))..))))--)))...... ( -28.84) >DroYak_CAF1 24463 96 + 1 UAAAAAGUA---------------AUAGGCAAAAAAACCACUUGGAUACCUCA-A--GUUUCUGAUUUC-UUUGAAGUCGCAAAACAACUUU-UUGGAUCUUGGAGG--AGAAGAGCA .........---------------....((.........((((((.....)))-)--)).(((..((((-((..(..((.(((((.....))-)))))..)..))))--)).))))). ( -19.30) >consensus UAAUAAGUAAAACAGC_UGCCCAAAUAGGCAAAAAAAU___UUGGAUUCCUCA_AAGGAAUCCGCCUUU_UUUGGAGUCCCAAAACAACUUU_UUGGAUCUUGGAGG__AGCAGAGCA ....((((.........((((......))))............(((((((....((((......)))).....))))))).......))))........................... ( -7.68 = -10.64 + 2.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:49 2006