Locus 1876

Sequence ID X_DroMel_CAF1
Location 5,198,380 – 5,198,471
Length 91
Max. P 0.996496
window3047

overview

Window 7

Location 5,198,380 – 5,198,471
Length 91
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 76.17
Mean single sequence MFE -25.32
Consensus MFE -16.22
Energy contribution -16.71
Covariance contribution 0.50
Combinations/Pair 1.19
Mean z-score -2.53
Structure conservation index 0.64
SVM decision value 2.71
SVM RNA-class probability 0.996496
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5198380 91 + 22224390
AAGUAGUUAAUAGAAGAAAUUGCAUUGGUUCAAAGUGACCAGACUAGGUGUUGUAAGCACUGUC--------GAAGCUGGUCACAUUGAAGCAUCCGUU----
..((((((.........))))))..((.(((((.((((((((.((.(((((.....)))))...--------..)))))))))).))))).))......---- ( -28.70)
>DroSec_CAF1 19123 90 + 1
AAAUAGUUAAAAGAAGAAACUGCAUAGGCUUAAAGUGACCGGACUU-GUGUUGUAAGCACUGUC--------AAAGCUGGUCACAUUAAAGCAUCAGCU----
.....................((....((((.((((((((((.(((-((((.....))))....--------.))))))))))).)).))))....)).---- ( -22.90)
>DroSim_CAF1 12894 89 + 1
AAAUAGU-AAAAGAAGAAACUGCAUAGGCUUAAAGUGACCGGACUU-GUGUUGUAAGCACUGUC--------GAAGCUGGUCACAUUAAAGCAUCAGUU----
.......-.........(((((.....((((.((((((((((.(((-((((.....))))....--------.))))))))))).)).))))..)))))---- ( -24.00)
>DroYak_CAF1 19472 99 + 1
GAAUAACUGAACAAAGAAACGGCAGAGUUUUGAAGUGACCAGACUU-GUAAAGUAAGCACUGUCAUUCUUUGGUGGCUGGUCACAUUAAAGCAGCU---UCCU
....................((.((.(((((((.((((((((.(((-(.....))))(((((........))))).)))))))).)))))))..))---.)). ( -25.70)
>consensus
AAAUAGUUAAAAGAAGAAACUGCAUAGGCUUAAAGUGACCAGACUU_GUGUUGUAAGCACUGUC________GAAGCUGGUCACAUUAAAGCAUCAGUU____
..........................(.(((((.((((((((.(((.((((.....)))).............))))))))))).))))).)........... (-16.22 = -16.71 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:46 2006