| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,187,265 – 5,187,375 |
| Length | 110 |
| Max. P | 0.885757 |
| Location | 5,187,265 – 5,187,375 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.40 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -11.22 |
| Energy contribution | -12.00 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5187265 110 + 22224390 CACACGCACACGUGGACUGAAAGAAAACUUCAGUCGAAACUUGCAAUUAACCAACAACUUAACUUCGUACGCAAGAUGAACAGAAAAAAUGCGAAACAAAAGUCAAGGAC ..((((....))))(((((((.......))))))).....(((((.((((........)))).(((((.(....)))))).........)))))................ ( -19.40) >DroSec_CAF1 7378 96 + 1 CACAUGCACACAUGGACUGAAAGAAAACUUCAGUCGAAACUUGCAAUUAACCAACAACUUAACUGCGUUCGCAAGAAGCGCAGAAAAGAAGU-----------AA---AU ....((((....(.(((((((.......))))))).)....))))........((..(((..((((((((....).)))))))..)))..))-----------..---.. ( -26.60) >DroEre_CAF1 7431 99 + 1 CUCACGCACACAUGGACUGAAAGAAAACUGCUGUCAAAACUUGAAAAUAACCACCAACUUAACUUCGUACGCAAGAUGCAAAGAAAAAA---------UAAGUUA--GGC ..............(((....((....))...)))..................((((((((.(((.((((....).))).)))......---------)))))).--)). ( -10.20) >consensus CACACGCACACAUGGACUGAAAGAAAACUUCAGUCGAAACUUGCAAUUAACCAACAACUUAACUUCGUACGCAAGAUGCACAGAAAAAA_G________AAGUAA__GAC ..((((....))))(((((((.......)))))))...........................(((.((((....).))).)))........................... (-11.22 = -12.00 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:44 2006