| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 651,480 – 651,597 |
| Length | 117 |
| Max. P | 0.617854 |
| Location | 651,480 – 651,597 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.20 |
| Mean single sequence MFE | -43.80 |
| Consensus MFE | -37.03 |
| Energy contribution | -37.37 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 651480 117 - 22224390 ACAACUCCUGGUAUGUUU---CCGCCGUACUCGCGUGUUCCAUUUGAAGGUUUCUCUGACUUGGAGCCAGUCCUAUGGAGCUGGCAAUCUCCGGUGUAAGCUUGGAUGUGCCCACCAGCA .......(((((..((((---.(((((.....((..(((((((..((.((((((........))))))..))..)))))))..))......))))).))))..((......))))))).. ( -36.60) >DroEre_CAF1 9374 117 - 1 ACAGCUCCUGGUGGGUUU---CCAUCGUGCUCGCCUGUUCUAUCUGAAGGUUUCUCUGACUGGGAGCCAGUCCUACGGAGCUGGCAAUCUCUGGCGUAAGCUUGGAUGUGCCCACCAGCA .......(((((((((.(---(((....(((((((..(((.....)))((((((((.....))))(((((..(....)..)))))))))...))))..))).))))...))))))))).. ( -49.10) >DroYak_CAF1 9715 120 - 1 ACAGCUCCUGGUGGGUUUCUUCUACCGUGCUCGCCUGUUCCAUUUGAAGGUUUCUCUGACUAGGAGCCAGUCCUACGGAGCUGGCAAUCUCCGGCGUAAGCUUGGAUGUGCCCACCAGCA .......(((((((((....((((....(((((((.............((((.....)))).((((((((..(....)..)))))....)))))))..))).))))...))))))))).. ( -45.70) >consensus ACAGCUCCUGGUGGGUUU___CCACCGUGCUCGCCUGUUCCAUUUGAAGGUUUCUCUGACUAGGAGCCAGUCCUACGGAGCUGGCAAUCUCCGGCGUAAGCUUGGAUGUGCCCACCAGCA .......(((((((((................(((.(((((....((.((((((........))))))..))....))))).)))....((((((....)).))))...))))))))).. (-37.03 = -37.37 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:29 2006