| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,147,344 – 5,147,441 |
| Length | 97 |
| Max. P | 0.640266 |
| Location | 5,147,344 – 5,147,441 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 74.16 |
| Mean single sequence MFE | -31.45 |
| Consensus MFE | -18.72 |
| Energy contribution | -19.38 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5147344 97 - 22224390 GCGAUUUGUUAUUCACGAAAGGCGGUGGAAUACCGCCGCCGGUAUUCGAAACGAUCGCCACAUCCGCACAAUUGCGGAAUGUCUCUGUGU---UAA----UUGA ((((((.(((.....((((.((((((((....))))))))....)))).)))))))))((((((((((....)))))).......)))).---...----.... ( -35.21) >DroSec_CAF1 28593 97 - 1 GCGACUUGUUGUUCACGAAAAGCGGUGGAACACCGCCGCCGGUGUUCGAAACGAUCGCCACAUCCGCACAAUUGCGGAAUGUCUCUGUGG---UAA----UGGG ....((..(...(((((....(((((((....))))))).((((.(((...))).))))(((((((((....))))).))))...)))))---..)----..)) ( -34.50) >DroEre_CAF1 674 97 - 1 GCGACUUAUUGUUCACGAAAAGCGGUGGCACACCACCGCCGGUGUUCGAGACAAUCGCCACAUCCGCACAGUUCCGGAAGGUCUCUGCAA---CAA----AUUG ((((....(((((..((((..(((((((....))))))).....)))).))))))))).......(((.((..((....)).)).)))..---...----.... ( -32.20) >DroWil_CAF1 680 92 - 1 GCGAUUUAUUAUUUACGAAAAUGGGCGGUACACCGCCUCCAGUAUUCGAUAUGAUGGCAAUGUCCGCGCAAUUACGAAAAGUUUCUGCAA---UA--------- ((((((((((((...((((.((((((((....))))))...)).))))..)))))))....)).)))(((...((.....))...)))..---..--------- ( -22.20) >DroYak_CAF1 24833 100 - 1 GCGACUUGUUGUUCACGAAAAGUGGCGGAAUGCCGCCGCCGGUGUUCGAGACGAUCGCCACAUCCGCACAGUUGCGAAAGGUCUCUGGAAACAUAA----GCCA ((((((((((((.........(((((((....))))))).((((.(((...))).)))))))...))).))))))....((..(.((....)).).----.)). ( -36.10) >DroMoj_CAF1 48554 101 - 1 GCGAUCUAUUGUUGACAAAGAUGGGCGGUACGCCGCCGCCGGUAUUCGAGAUGAUAGCGAUGUCGGCACAGUUACGGAAUGUUUCUGCAA---AUGCCAGAAGG (((.((((((((...........(((((....)))))((((..((.((.........))))..)))))))))...))).)))((((((..---..).))))).. ( -28.50) >consensus GCGACUUAUUGUUCACGAAAAGCGGCGGAACACCGCCGCCGGUAUUCGAGACGAUCGCCACAUCCGCACAAUUGCGGAAUGUCUCUGCAA___UAA____AUGG ((((.(((((.....((((..(((((((....))))))).....)))).)))))))))....((((........)))).......................... (-18.72 = -19.38 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:37 2006