Locus 1868

Sequence ID X_DroMel_CAF1
Location 5,145,601 – 5,145,700
Length 99
Max. P 0.820759
window3035

overview

Window 5

Location 5,145,601 – 5,145,700
Length 99
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 80.19
Mean single sequence MFE -23.11
Consensus MFE -15.68
Energy contribution -16.68
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.68
SVM decision value 0.68
SVM RNA-class probability 0.820759
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5145601 99 + 22224390
CCCUUUUUUAUUUCUGCCAGUGCACCCU-UGGCUUUUAAUGAGCUUCGAACGCGAGCCAAUGCACAUA--------------UAUAUAUUUUUAGCGCAGAAAUCAUCUGCAUA
.........(((((((((.(((((...(-((((((.......((.......))))))))))))))...--------------..((......))).)))))))).......... ( -21.51)
>DroSec_CAF1 26837 92 + 1
CCCUUUUU---UUCUGCCAGUGCAGCCC-UGGCAUUUAAUGAGCUUCGAACACGAGCCAAUGCACAUA------------------UAUUUUUAGCGCAGAAAUCAUCUGCAUA
........---........(((((((..-..))......((.(((.((....))))))).)))))...------------------..........(((((.....)))))... ( -21.20)
>DroSim_CAF1 20691 92 + 1
CCCAUUUU---UUCUGCCAGUGCACCCU-UGGCUUUUAAUGAGCUUCGAACGCGAGCCAAUGCACAUA------------------UAUUUUUAGCGCAGAAAUCAUCUGCAUA
........---........(((((...(-((((((.......((.......))))))))))))))...------------------..........(((((.....)))))... ( -21.11)
>DroYak_CAF1 23193 106 + 1
CCC--UUU---UUCUGCCAGUGCAGCCCGGGGCUUUUAAUGAGAAUCGAACUCGAGCAACUGCACACAUAUGUACAUAUGUAUAUAUAUUUUUAGCGCAGAAAU---CUGCGUA
(((--(..---..((((....))))...)))).......(((((((((....)))((....))....((((((((....)))))))).))))))((((((....---)))))). ( -28.60)
>consensus
CCCUUUUU___UUCUGCCAGUGCACCCC_UGGCUUUUAAUGAGCUUCGAACGCGAGCCAAUGCACAUA__________________UAUUUUUAGCGCAGAAAUCAUCUGCAUA
...................(((((.....((((((....((.....)).....)))))).)))))...............................(((((.....)))))... (-15.68 = -16.68 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:36 2006