Locus 1867

Sequence ID X_DroMel_CAF1
Location 5,144,719 – 5,144,816
Length 97
Max. P 0.787529
window3034

overview

Window 4

Location 5,144,719 – 5,144,816
Length 97
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 72.11
Mean single sequence MFE -22.13
Consensus MFE -13.90
Energy contribution -13.57
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -1.47
Structure conservation index 0.63
SVM decision value 0.58
SVM RNA-class probability 0.787529
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5144719 97 - 22224390
AACCGAACUGCCAGCAAAAAGUUGACAAGGAGUAAAACAAAAAACA----AAAGGGUGACUGAUUAUUCGAUGGUUUGGUCGCCAAGCGGUUAAUUCGAAG
...((((((((((((.....))))......................----....((((((..(............)..))))))..)))))....)))... ( -21.00)
>DroSec_CAF1 25989 80 - 1
---------------UGAAAGUUGGCAAGGAGUAAAACAA--AACC----GCACGGUGACUGAUUAUGCGAUGGUUUGGUCGCCAAGGGGUUAAAUCGAAG
---------------.((..(((.((.....))..)))..--((((----.(..((((((..(............)..))))))..).))))...)).... ( -17.00)
>DroYak_CAF1 22570 94 - 1
AA---AACUGCCAGC--AAAGUUGGCAAGGAGCUAAGAAA--GGCGUUAAUCACGGUGACUGAUUAUUCGAUGGCUUGGUCGCCAAGCGGUUAAUUAGAAG
..---...(((((((--...))))))).((((((......--)))..((((((.(....))))))))))(((.((((((...)))))).)))......... ( -28.40)
>consensus
AA___AACUGCCAGC__AAAGUUGGCAAGGAGUAAAACAA__AACA____ACACGGUGACUGAUUAUUCGAUGGUUUGGUCGCCAAGCGGUUAAUUCGAAG
...................(((((((.....((..........)).........((((((..(............)..)))))).....)))))))..... (-13.90 = -13.57 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:35 2006