Locus 1866

Sequence ID X_DroMel_CAF1
Location 5,142,407 – 5,142,497
Length 90
Max. P 0.678563
window3033

overview

Window 3

Location 5,142,407 – 5,142,497
Length 90
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 87.46
Mean single sequence MFE -28.17
Consensus MFE -21.49
Energy contribution -21.60
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.20
Structure conservation index 0.76
SVM decision value 0.30
SVM RNA-class probability 0.678563
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5142407 90 - 22224390
CUUUUGCUUUCUAUCGAGCC-------AAAAAGGCCGAGCUUCCCAAAUAAAGGGGAGCCCACCAACGUGAUCCCCAUGCGAUUGCUUCGCUUGUUC
...(..(......(((.(((-------.....))))))(((((((.......)))))))........)..)....((.((((.....)))).))... ( -25.70)
>DroSec_CAF1 23676 93 - 1
CUUUUGCUUUCUAUCGAGCCAAAAGCCAAAAAGGCCGAGCUCCCAA--AAAAGGGGAGCCCACCAACGUGAUACCCAUGCCAUUGG--GGCUUGUUC
..............((((((....(((.....))).(.((((((..--.....)))))).).((((((((.....))))...))))--))))))... ( -29.40)
>DroSim_CAF1 17474 93 - 1
CUUUUGCUUUCUAUCGAGCCAAAAGCCAAAAAGGCCGAGCUCCCAA--AAAAGGGGAGCCCACCAACGUGAUACCCAUGCCAUUGG--GGCUUGUUC
..............((((((....(((.....))).(.((((((..--.....)))))).).((((((((.....))))...))))--))))))... ( -29.40)
>consensus
CUUUUGCUUUCUAUCGAGCCAAAAGCCAAAAAGGCCGAGCUCCCAA__AAAAGGGGAGCCCACCAACGUGAUACCCAUGCCAUUGG__GGCUUGUUC
..............((((((............((..(.((((((.........)))))))..))..((((.....)))).........))))))... (-21.49 = -21.60 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:34 2006