Locus 1865

Sequence ID X_DroMel_CAF1
Location 5,141,286 – 5,141,376
Length 90
Max. P 0.712089
window3032

overview

Window 2

Location 5,141,286 – 5,141,376
Length 90
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 68.81
Mean single sequence MFE -36.16
Consensus MFE -15.26
Energy contribution -13.78
Covariance contribution -1.48
Combinations/Pair 1.35
Mean z-score -1.78
Structure conservation index 0.42
SVM decision value 0.38
SVM RNA-class probability 0.712089
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5141286 90 - 22224390
---------------------------U-GUGUAUUGG--GUUGUGUAUAUAUCGCGUGCUUUGCGUUUGCGCAGCGGCAACGUUCUGAGUUCGUUUGCCGCUCGACGAUCGAAUUUCAA
---------------------------(-(...(((.(--(((((........((((.....))))....((.((((((((((.........)).)))))))))))))))).)))..)). ( -26.80)
>DroVir_CAF1 35791 99 - 1
------------------AAUUG-GAAUUUGGAUUUGG--AGUGUGUGACUGGCGCGUGCUUUGCGUUUGCGCAGCCGCAGCGUUCUGAGUUCGUUUGUCGAUUUGCGCUCGAAUUUCAA
------------------.....-....(((((.((.(--(((((.((((..(((...((((.(((((.(((....))))))))...)))).)))..))))....)))))).)).))))) ( -31.90)
>DroPse_CAF1 10906 85 - 1
-------------------------------GUGUGUG--GGUGUGU--UGGGCGCGUGCUAUGCGUCUGCGCAGCGGCAACGUUCUGAUUUCGUACGACGCCCGGCGCUCGCAUUUCAA
-------------------------------..(((((--(((((..--(((((((((((..((((....))))(((....))).........))))).))))))))))))))))..... ( -41.00)
>DroMoj_CAF1 38056 100 - 1
------------------AAUUG-GAGU-UGGAGUUGGGUAGUGUGUGGCCGGCGCGUGCUUUGCGUUUGCGCAGCCGCAGCGUUCUGAGUUCGUUUGUCGAUUUGCGCUUGAAUUUCAA
------------------..(((-((((-(.(((((.((..((.((((((..(((((.((.....)).))))).))))))))...)).)..(((.....))).....)))).)))))))) ( -31.20)
>DroPer_CAF1 12249 115 - 1
UAAGCGAGUAUAACUCCCGAUUGUGCGU-GUGUGUGUG--GGUGUGU--UGGGCGCGUGCUAUGCGUCUGCGCAGCGGCAACGUUCUGAUUUCGUACGACGCCCGGCGCUCGCAUUUCAA
...((((((...((.((((...(..(..-..)..).))--)).))((--(((((((((((..((((....))))(((....))).........))))).))))))))))))))....... ( -49.90)
>consensus
___________________AUUG_G__U_GGGUGUUGG__GGUGUGU__CGGGCGCGUGCUUUGCGUUUGCGCAGCGGCAACGUUCUGAGUUCGUUUGACGCUCGGCGCUCGAAUUUCAA
.................................(((.(..(((((......((.((((((..((((....))))...)).)))).)).....((.....))....)))))).)))..... (-15.26 = -13.78 +  -1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:33 2006