Locus 1864

Sequence ID X_DroMel_CAF1
Location 5,136,190 – 5,136,302
Length 112
Max. P 0.730699
window3031

overview

Window 1

Location 5,136,190 – 5,136,302
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.75
Mean single sequence MFE -32.20
Consensus MFE -24.24
Energy contribution -24.43
Covariance contribution 0.19
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.75
SVM decision value 0.42
SVM RNA-class probability 0.730699
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5136190 112 - 22224390
------UUUAUU--CCCCUAAUAUUGUUUUCGGCUUUGUUUACUUUGGUGAAUUGGCUUGAUUAGGCUGUCAAAACGAUGGACUUUGCGGGCAGCAUUUAAUUUAUUGUUGCCGGGCCAU
------......--.(((...(((((((((.(((...((((((....)))))).((((......)))))))))))))))).........(((((((..........)))))))))).... ( -29.70)
>DroSec_CAF1 12415 120 - 1
UUUUAUUCCAUUGGCCCCUAAUAUUGUUUUCGGCUUUGUUUACUUUGGUGGAUUGGCUUGAUUAGGCUGUCAAAACGGUGGACUUUGCGGGAAGCAUUUAAUUCAUUGUUGGCGGCCCAU
............((((.((((((.(((((((.((...(((((((.(..(((...((((......)))).)))..).)))))))...)).)))))))..........)))))).))))... ( -34.70)
>DroSim_CAF1 12210 120 - 1
UUUUAUUCCAUUGGCCCCUAAUAUUGUUUUCGGCUUUGUUUACUUUGGUGGAUUGGCUUGAUUAGGCUGUCAAAACGGUGGACUUUGCGGGAAGCAUUUAAUUCAUUGUUGGCGGGCCAU
...........((((((((((((.(((((((.((...(((((((.(..(((...((((......)))).)))..).)))))))...)).)))))))..........)))))).)))))). ( -39.60)
>DroYak_CAF1 13810 120 - 1
UUUUAUUUUUUUUUUGCCUCAUAUUGUUUUUGGCUUUGUUUACUUGGGUGGAUUGGCUUGAUUAGGCUGUCAAAACUGUGGAGUUCGCGGGAAGCAUUUAAUUCAUUGUUGGCGGGCCAU
..............(((.((.......(((((((...(((((.(..(((......)))..).))))).)))))))(((((.....))))))).))).............(((....))). ( -24.80)
>consensus
UUUUAUUCCAUUGGCCCCUAAUAUUGUUUUCGGCUUUGUUUACUUUGGUGGAUUGGCUUGAUUAGGCUGUCAAAACGGUGGACUUUGCGGGAAGCAUUUAAUUCAUUGUUGGCGGGCCAU
............................((.((((..((((((....)))))).)))).))...((((((((..((((((((...(((.....))).....)))))))))))))).)).. (-24.24 = -24.43 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:32 2006