| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,134,960 – 5,135,057 |
| Length | 97 |
| Max. P | 0.813034 |
| Location | 5,134,960 – 5,135,057 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.88 |
| Mean single sequence MFE | -19.96 |
| Consensus MFE | -9.97 |
| Energy contribution | -11.84 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.813034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5134960 97 + 22224390 CCAUAAUUCGUUCGUUCGAUAAAU--------GACAACUACCAUUUGUUGAACUAAAAACAAUAAGGUUUAAACUUUUGAGUAAAAUGCAGUUUAAAC-UAAAGUC .............(((((((((((--------(........))))))))))))............((((((((((.((......))...)))))))))-)...... ( -20.50) >DroSec_CAF1 11201 93 + 1 -UAUU---------AUUGAUAAAUGGCAUAUUGACAAGUGCCAUUUGUUGAACUAAAAACAAUAAGGUUUAAACUUUUGAGUA--ACGCAGUUUAAAC-UAAAGUC -....---------.(..(((((((((((........)))))))))))..)..............((((((((((........--....)))))))))-)...... ( -23.40) >DroSim_CAF1 10939 93 + 1 -UAUU---------AUUGAUAAAUGGCAUAUUGACAAGUGCCAUUUGUUGAACUAAAAACAAUAACGAUUAAACUUUUGAGUA--ACGCAGUUUAAAC-UAAAGUC -....---------.(..(((((((((((........)))))))))))..).................(((((((........--....)))))))..-....... ( -18.30) >DroYak_CAF1 12561 94 + 1 -UAUU---------UUGGAUGAAAGGUGUAUUGAUGAAUUCCUUCUGCUGAACUAAAAACAAGAGGGUUUCAACUUUUGAGUA--AUGCAAUUUAAAUUUAAAGUC -.(((---------((((((..(((.((((((..((((..((((((...............)))))).))))(((....))))--))))).)))..))))))))). ( -17.66) >consensus _UAUU_________AUUGAUAAAUGGCAUAUUGACAAGUGCCAUUUGUUGAACUAAAAACAAUAAGGUUUAAACUUUUGAGUA__ACGCAGUUUAAAC_UAAAGUC ...............((((((((((((((........))))))))))))))...............(((((((((..............)))))))))........ ( -9.97 = -11.84 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:31 2006