Locus 1855

Sequence ID X_DroMel_CAF1
Location 5,125,450 – 5,125,545
Length 95
Max. P 0.783279
window3015

overview

Window 5

Location 5,125,450 – 5,125,545
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 96.49
Mean single sequence MFE -25.63
Consensus MFE -23.90
Energy contribution -23.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.93
SVM decision value 0.56
SVM RNA-class probability 0.783279
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5125450 95 - 22224390
AGGCAAUUAAACGAUUUACGUUGGCUUAAAAACACACUCUUCUUUGGCAAAGAGUUUGCCAAAUUGGUUGGUCGCCUUGAGCCAAACUUUGUGCU
.((((....((((.....))))(((((((....((...((..((((((((.....))))))))..))...))....)))))))........)))) ( -25.60)
>DroSec_CAF1 1677 95 - 1
AGGCAAUUAAACGAUUUACGUUGGCUUAAAAACACACUCUUCUUUGGCAAAGAGUUUGCCAAAUUGGUUGGUCGGCUUGAGCCAAACGUUGUUAA
.........((((((.....(((((((((...(((...((..((((((((.....))))))))..))...)).)..)))))))))..)))))).. ( -25.90)
>DroSim_CAF1 1518 95 - 1
AGGCAAUUAAACGAUUUACGUUGGCUUAAAAACACACUCUUCUUUGGCAAAGAGUUUGCCAAAUUGGUUGGUCGCCUUGAGCCAAACUUUGUGCA
..(((....((((.....))))(((((((....((...((..((((((((.....))))))))..))...))....)))))))........))). ( -25.40)
>consensus
AGGCAAUUAAACGAUUUACGUUGGCUUAAAAACACACUCUUCUUUGGCAAAGAGUUUGCCAAAUUGGUUGGUCGCCUUGAGCCAAACUUUGUGCA
..((((...((((.....))))(((((((....((...((..((((((((.....))))))))..))...))....))))))).....))))... (-23.90 = -23.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:18 2006