Locus 1854

Sequence ID X_DroMel_CAF1
Location 5,124,946 – 5,125,046
Length 100
Max. P 0.876700
window3014

overview

Window 4

Location 5,124,946 – 5,125,046
Length 100
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 97.41
Mean single sequence MFE -23.97
Consensus MFE -22.10
Energy contribution -22.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.29
Structure conservation index 0.92
SVM decision value 0.90
SVM RNA-class probability 0.876700
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5124946 100 + 22224390
AUGUUGCAACAACGUGUACAACAACAACUUGUAGGAGACAAUAGAUAAUGAUGACGCGUCAGCUUUUGUCAUGUAACAACGAGCACAGCA---GCAACAACAA
.((((((.....(((.((((((((....))))....(((((.((....(((((...))))).)).))))).))))...))).((...)).---)))))).... ( -24.30)
>DroSec_CAF1 1222 103 + 1
AUGUUGCAACAACUUGUACAACAACAACUUGUAGGAGACAAUAGAUAAUGAUGACGCGUCAGCUUUUGUCAUGUAACAACGAGCACAGCAGCAGCAACAACAA
.((((((.((((.((((......)))).))))....(((((.((....(((((...))))).)).)))))............((......)).)))))).... ( -23.80)
>DroSim_CAF1 1066 103 + 1
AUGUUGCAACAACUUGUACAACAACAACUUGUAGGAGACAAUAGAUAAUGAUGACGCGUCAGCUUUUGUCAUGUAACAACGAGCACAGCAGCAGCAACAACAA
.((((((.((((.((((......)))).))))....(((((.((....(((((...))))).)).)))))............((......)).)))))).... ( -23.80)
>consensus
AUGUUGCAACAACUUGUACAACAACAACUUGUAGGAGACAAUAGAUAAUGAUGACGCGUCAGCUUUUGUCAUGUAACAACGAGCACAGCAGCAGCAACAACAA
.((((((.((((.((((......)))).))))....(((((.((....(((((...))))).)).))))).......................)))))).... (-22.10 = -22.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:17 2006