| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 648,546 – 648,643 |
| Length | 97 |
| Max. P | 0.615229 |
| Location | 648,546 – 648,643 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -23.30 |
| Energy contribution | -23.08 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 648546 97 + 22224390 GUCCAAAUAAUUGGGGUCGGCGGGCUAUCAAAUUGGACAUCGACUGCCGUCCGUCGGAAGUCGGAAUUCUC-AUCGAUAUUCCAGUAUGUACAUAUAU----- ..((((....))))((((....))))..((.((((((.(((((.((...((((.(....).)))).....)-))))))..)))))).)).........----- ( -25.50) >DroSec_CAF1 14125 103 + 1 GUCCAAAUAAUUGGGGUCGGCAGGCUAUCAAAUUGGACAUCGACUGCCGUCCGUCGGAAGUCGGAAUUCUCAAUCGAUAUUCCAGAAUGUACAUAUAUGUACA ((((((....((((((((....)))).)))).))))))(((((.((...((((.(....).)))).....)).))))).........((((((....)))))) ( -30.90) >DroYak_CAF1 6793 85 + 1 GUCCAAAUGAUUGGGGUCGGCGGGCUAUCACAUUGGACAUCGACUGCCGUCCGUCGGAAGUCGGAAUUCGGAAUUGAUAUACU----------UG-------- ((((((.((((...((((....))))))))..))))))(((((...(((((((.(....).))))...)))..))))).....----------..-------- ( -27.70) >consensus GUCCAAAUAAUUGGGGUCGGCGGGCUAUCAAAUUGGACAUCGACUGCCGUCCGUCGGAAGUCGGAAUUCUCAAUCGAUAUUCCAG_AUGUACAUAUAU_____ ((((((........((((....))))......))))))(((((......((((.(....).))))........)))))......................... (-23.30 = -23.08 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:25 2006