Locus 1847

Sequence ID X_DroMel_CAF1
Location 5,097,881 – 5,097,996
Length 115
Max. P 0.511323
window3002

overview

Window 2

Location 5,097,881 – 5,097,996
Length 115
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 85.58
Mean single sequence MFE -22.24
Consensus MFE -13.85
Energy contribution -15.29
Covariance contribution 1.44
Combinations/Pair 1.13
Mean z-score -1.99
Structure conservation index 0.62
SVM decision value -0.04
SVM RNA-class probability 0.511323
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5097881 115 - 22224390
GAAUCGUA-CAAGACACAACAAUUAGAGCUGGAGAAAAUAUAGUUUCCCUAUAGUUGUACACAUGGAAAACCGGAUUAAUCUCCAGCCCCACACAACAUAUACAUACAUUUACGAU
..((((((-...(......).......((((((((...(((((.....)))))..........(((....)))......)))))))).......................)))))) ( -19.80)
>DroSec_CAF1 9149 115 - 1
GAAUCGGGCCAAGACACAACAAU-AAAGCUGGAGAAAAUUCAGUUUCCCUAUAGUUGUAUGCUUGGAAAACAGGAUUAAUCUCUAGCUCCACACAACAUAUACAUACAUUUACGAU
..((((..(((((..(((((.((-(((((((((.....))))))))...))).)))))...)))))......((((((.....))).)))......................)))) ( -23.70)
>DroSim_CAF1 10766 115 - 1
GAAUCGGGCCAAGACACAACAAU-AGAGCUGGAGAAAAUUCAGUUUCCCCAUAGUUGUAUGCUUGGAAAACAGGAUUAAUCUCUAGCUCCACACAACAUAUACAUACAUUUACGAU
..(((((.......)........-.((((((((((.(((((.((((..(((.(((.....)))))).)))).)))))..)))))))))).......................)))) ( -25.70)
>DroEre_CAF1 9230 114 - 1
UAAUCGGA-CAAGACACAACAAU-AAAGCUGGAGAAACGUCCGUUUCCCCAUAGUUUUAUACUUGGAAAACAGGAUUUAUCUCCAGCUCCACACAACAUAUACAUACAUUUACGAU
..((((..-...(......)...-..(((((((((.(.((((.(((((....(((.....))).)))))...)))).).)))))))))........................)))) ( -26.50)
>DroYak_CAF1 9076 102 - 1
UAAUCGGA-CAAGACACAACAAU-AGAGCU------------GUUUCUUUAUAGUUUAACACUUGGAAAACUGGAUUAAUCUCCAGCCCCGCACAACAUAUACCUACAUUUACGAU
....(((.-((((....(((.((-((((..------------....)))))).))).....)))).....(((((......)))))..)))......................... ( -15.50)
>consensus
GAAUCGGA_CAAGACACAACAAU_AGAGCUGGAGAAAAUUCAGUUUCCCUAUAGUUGUAUACUUGGAAAACAGGAUUAAUCUCCAGCUCCACACAACAUAUACAUACAUUUACGAU
..((((......(......).....((((((((((........(((((....(((.....))).)))))..........)))))))))).......................)))) (-13.85 = -15.29 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:07 2006