Locus 1846

Sequence ID X_DroMel_CAF1
Location 5,094,697 – 5,094,789
Length 92
Max. P 0.524998
window3001

overview

Window 1

Location 5,094,697 – 5,094,789
Length 92
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 76.87
Mean single sequence MFE -30.41
Consensus MFE -17.49
Energy contribution -17.85
Covariance contribution 0.36
Combinations/Pair 1.33
Mean z-score -1.49
Structure conservation index 0.57
SVM decision value -0.02
SVM RNA-class probability 0.524998
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5094697 92 - 22224390
GCGUAUCUUUAGCAUCUGGCUAAAGUUAUCGCCCAAAUGACGUCGGCUGGCCGCAUUGCUAUUGUUGUUGGUGCCAUGAACAGCUGAG-GAAG-------
(((((.(((((((.....))))))).)).)))........(.(((((((....(((.((.(((......))))).)))..))))))).-)...------- ( -28.10)
>DroVir_CAF1 8214 86 - 1
UCGAAUCUUAAGCAUUUGGCUAAAGUUGUCGCCCAAAUGACGACGGCUGACCGCGUUGCUGUUGUUAUUGGUGCCAUGCACAGCUA--------------
..........(((.....)))..(((((((((((((.((((((((((..........)))))))))))))).))...).)))))).-------------- ( -25.50)
>DroWil_CAF1 6496 92 - 1
GCGAAUCUUUAGCAUUUGACUAAAGUUAUCGCCCAGGUGACGCCGGCUAACUGCAUUGCUAUUAUUAUUCGUUCCAUGGCCAGCUAAC-ACAA-------
((((..(((((((....).))))))...))))....(((..((.(((((...((................))....))))).))...)-))..------- ( -19.89)
>DroMoj_CAF1 9561 99 - 1
GCGAAUCUUUAGCAUUUGGCUGAAGUUGUCGCCCAAAUGGCGACGGCUCACCGCAUGGCUAUUGUUGUUGGUGCCAUGCACAGCUGGA-AAGAGAGAGCG
((...(((((....((..((((.((((((((((.....))))))))))....(((((((.(((......)))))))))).))))..))-.)))))..)). ( -43.60)
>DroAna_CAF1 5983 95 - 1
ACGAAUCUUCAGCAUCUGGCUGAAGUUAUCACCCAGGUGGCGGCGGCUGACGGCGUUGCUGUUGUUAUUGGUGCCAUGGACAGCUGAA-AAUGGAC----
.......((((((..((((.(((.....))).))))((((((.(((.((((((((....))))))))))).)))))).....))))))-.......---- ( -33.30)
>DroPer_CAF1 6783 92 - 1
GCGGAUCUUCAGCAUUUGGCUGAAGUUGUCCCCCAAAUGGCGGCGGCUCACCGCAUUGCUGUUGUUAUUGGCGCCGUGCACAGCUACAGGAU--------
((((..(((((((.....)))))))..(((((((....)).)).)))...))))...(((((.((...((....)).)))))))........-------- ( -32.10)
>consensus
GCGAAUCUUUAGCAUUUGGCUAAAGUUAUCGCCCAAAUGACGACGGCUGACCGCAUUGCUAUUGUUAUUGGUGCCAUGCACAGCUAAA_AAA________
((((..(((((((.....)))))))...))))((.((((((((.(((..........))).))))))))))............................. (-17.49 = -17.85 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:06 2006