Locus 1844

Sequence ID X_DroMel_CAF1
Location 5,088,655 – 5,088,751
Length 96
Max. P 0.635825
window2999

overview

Window 9

Location 5,088,655 – 5,088,751
Length 96
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -23.35
Consensus MFE -17.49
Energy contribution -17.80
Covariance contribution 0.31
Combinations/Pair 1.19
Mean z-score -1.09
Structure conservation index 0.75
SVM decision value 0.21
SVM RNA-class probability 0.635825
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5088655 96 - 22224390
CUAAUUUUUAAUGA-AUA----UACCAACUCACCUUUAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUAUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA
..............-...----.................((((((((((.(((......))).))))))))))........(((((((....)).))))). ( -23.00)
>DroVir_CAF1 41 79 - 1
---------------AUG-------GUACUCACCUUUAUGGAUGGGGGUCCACUGGAGUGGGAAUCAUUAUCCGCCAGCACCGAGGGAUUGUUCUCAUCAA
---------------.((-------((.((((((.....)).))))..(((((....)))))...........)))).....((((((....)))).)).. ( -19.90)
>DroSec_CAF1 41 96 - 1
CUAAUUUUUAAUGA-AUA----UAACAACUCACCUUUAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUAUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA
..............-...----.................((((((((((.(((......))).))))))))))........(((((((....)).))))). ( -23.00)
>DroEre_CAF1 41 100 - 1
CUAAUUUUUGAUGG-AUAUAUGUACUAACUCACCUUUAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUGUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA
.....(((((.(((-(((.(((.......((((.(((.(((((....)))))...))).))))..))))))))).))))).(((((((....)).))))). ( -24.30)
>DroYak_CAF1 41 93 - 1
G----UUUUAAUGGGAAA----UAUCAACUCACCUUAAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUAUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA
(----((((..((((...----......)))).......((((((((((.(((......))).))))))))))...)))))(((((((....)).))))). ( -25.30)
>DroAna_CAF1 41 91 - 1
UGAGUUUCUAUCGC-AU---------AGCUUACCUUGAUCGAUGGCGGUCCACUGGAAUGCGAGUCGUUGUCGGCCAGGACCGAGGGAUUGUUCUCAUCCA
((((..(((.((((-..---------.))....((((..(((..((((..(.(......).)..))))..)))..))))...)).))).....)))).... ( -24.60)
>consensus
CUAAUUUUUAAUGA_AUA____UA_CAACUCACCUUUAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUAUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA
......................................(((((((((((.(((......))).))))))))))).......(((((((....)).))))). (-17.49 = -17.80 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:04 2006