| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,082,572 – 5,082,681 |
| Length | 109 |
| Max. P | 0.684144 |
| Location | 5,082,572 – 5,082,681 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.97 |
| Mean single sequence MFE | -33.67 |
| Consensus MFE | -32.97 |
| Energy contribution | -32.97 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5082572 109 + 22224390 UUGUGGUGAACACGGUGCAUUUAAUAUCGCAGCUAGCGGAUAAUCUGAUUAUUGCCUGCGGAGGAUUGCUGCCUCUUUUGGCCAGCGCCACGUCACCCAAUGUAAGUAU----------- (((.(((((....(((((........((((.....))))..............(((...(((((.......)))))...)))..)))))...)))))))).........----------- ( -32.80) >DroSim_CAF1 711 109 + 1 UUGUGGUGAACACGGUGCAUUUGAUAUCGCAACUGGCGGAUAACCUGAUUAUUGCCUGUGGAGGAUUGCUGCCUCUUUUGGCCAGCGCCACGUCACCCAAUGUAAGUAU----------- (((.(((((....(((((........((((.....))))..............(((...(((((.......)))))...)))..)))))...)))))))).........----------- ( -33.40) >DroYak_CAF1 711 120 + 1 UUGUGGUGAACACGGUGCAUUUGAUAUCGCAACUAGCGGACAACCUGAUUAUCGCCUGUGGAGGAUUGCUGCCUCUUCUGGCCAGCGCCACAUCACCCAAUGUAAGUGUUUAAUCUAAAA ......((((((((((((....((((((((.....))((....)).)).))))(((...(((((.......)))))...)))..)))))((((......))))..)))))))........ ( -34.80) >consensus UUGUGGUGAACACGGUGCAUUUGAUAUCGCAACUAGCGGAUAACCUGAUUAUUGCCUGUGGAGGAUUGCUGCCUCUUUUGGCCAGCGCCACGUCACCCAAUGUAAGUAU___________ (((.(((((....(((((........((((.....))))..............(((...(((((.......)))))...)))..)))))...)))))))).................... (-32.97 = -32.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:02 2006