Locus 1841

Sequence ID X_DroMel_CAF1
Location 5,082,052 – 5,082,172
Length 120
Max. P 0.817934
window2996

overview

Window 6

Location 5,082,052 – 5,082,172
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -41.00
Consensus MFE -39.21
Energy contribution -39.10
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.86
Structure conservation index 0.96
SVM decision value 0.67
SVM RNA-class probability 0.817934
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5082052 120 + 22224390
UCGCCAGCCCCCGAAGAGCAAUCGCCACAAAUACUGGCAAUGGAAUCACCAGCAACGUCGGUGCGGGUCAAACCCACUGAGGUGGAUUCCACCACCCAGACUACGCCGAAGAACGAGGCU
.....((((..((....((....((((.......))))..(((.....)))))....((((((.(((.....))).(((.(((((......))))))))....))))))....)).)))) ( -41.10)
>DroSim_CAF1 191 120 + 1
UCGCCAGCCCCCGAAGAGCAAUCGCCACAAAUACUGGCAAUGGAAUCACCAGCAGCGUCGGUGCGGGUCAAGCCCACUGAGGUGGAUUCCACCACCCAGACUACGCCAAAGAACGAGGCC
..(((.((..((((...((....((((.......))))..(((.....)))...)).)))).))(((.....))).(((.(((((......)))))))).................))). ( -39.10)
>DroYak_CAF1 191 120 + 1
UCGCCAGCCCCCGAAGAGCAAUCGCCGCAAAUACUGGCCAUGGAAUCUCCAGCUACGUCGGCGCGGGUCAAACCCACUGAGGUGGAUUCCACCACCCAGACUACGCCGAAGAACGAGGCC
..(((((....((..((....))..))......)))))..(((.....)))(((.((((((((.(((.....))).(((.(((((......))))))))....))))))....)).))). ( -42.80)
>consensus
UCGCCAGCCCCCGAAGAGCAAUCGCCACAAAUACUGGCAAUGGAAUCACCAGCAACGUCGGUGCGGGUCAAACCCACUGAGGUGGAUUCCACCACCCAGACUACGCCGAAGAACGAGGCC
......(((..((....((....((((.......))))..(((.....)))))....((((((.(((.....))).(((.(((((......))))))))....))))))....)).))). (-39.21 = -39.10 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:01 2006