Locus 1840

Sequence ID X_DroMel_CAF1
Location 5,081,892 – 5,082,012
Length 120
Max. P 0.715011
window2995

overview

Window 5

Location 5,081,892 – 5,082,012
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.78
Mean single sequence MFE -36.80
Consensus MFE -33.65
Energy contribution -34.43
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.83
Structure conservation index 0.91
SVM decision value 0.39
SVM RNA-class probability 0.715011
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5081892 120 + 22224390
ACCGAAACCCCAGGAAACUGAACAACAAAAGUCGCAGGAGGUCGCCGAAGAACUACCUCAAAAACCAGAGGAGCAGGUGGUGGCCAUUGUCAACCAAGUCCUGGACACUCUGGUAGACGA
((((......(((....)))..........(((.(((((((((((((.....((.((((........))))))....)))))))).(((.....))).))))))))....))))...... ( -38.80)
>DroSim_CAF1 31 120 + 1
ACCGAAACCCCAGGAAACUGAGCAACAAAAGUCCCAGGAGGUCGCCGAAGAACUACCUCAAAAACCAGAGGAGCAGGUGGUGGCCAUUGUCAACCAAGUCCUGGACACUCUGGUAGACGA
((((......(((....)))..........((((.((((((((((((.....((.((((........))))))....)))))))).(((.....))).))))))))....))))...... ( -38.80)
>DroYak_CAF1 31 120 + 1
ACCUAAACCCAAGGAAACUGAGCAGCAAAAGUCCCUGGAGGUCGCCGAAGAACUACCUCAGAAACCGGAGGAGCAGGCUGUGGCCAUUGUUAACCAAGUCCUGGACACUUUGGUGGACGA
...........((....))...........(((((..((((((............((((........))))..((((((.(((..........))))).))))))).)))..).)))).. ( -32.80)
>consensus
ACCGAAACCCCAGGAAACUGAGCAACAAAAGUCCCAGGAGGUCGCCGAAGAACUACCUCAAAAACCAGAGGAGCAGGUGGUGGCCAUUGUCAACCAAGUCCUGGACACUCUGGUAGACGA
(((.......(((....)))..........(((.(((((((((((((.....((.((((........))))))....)))))))).(((.....))).)))))))).....)))...... (-33.65 = -34.43 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:00 2006