| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 647,267 – 647,376 |
| Length | 109 |
| Max. P | 0.625582 |
| Location | 647,267 – 647,376 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 73.69 |
| Mean single sequence MFE | -32.70 |
| Consensus MFE | -24.50 |
| Energy contribution | -24.88 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 647267 109 - 22224390 CAGCAUUUCAGAAUUGAGAGUCCGAGAGGUUUUCGGAUCGGAAUGGGAUCUAGUCGAGCGACAAAUCCAGGGGCUGUGUGGCCAAAGGGAUUGAC---------AAAAUACAAGGGGG ...((((((.((.(((((((.((....))))))))).))))))))...(((.(((....))).(((((...((((....))))....)))))...---------..........))). ( -29.80) >DroSim_CAF1 15041 118 - 1 CAGCAUUUUAGAAAUGAGAGUCCGAGAGGUUUUCGGAUCGGAAUGGGAUCUAGUCGAGCGACAAGUCCAGAGGCUGUGUGGCCAAAGGGAUUGAUCAGCCGACAAAAAUACUAGGGGG .....((((((....(((((.((....)))))))(((((.......))))).((((.((((..(((((...((((....))))....)))))..)).)))))).......)))))).. ( -34.90) >DroEre_CAF1 5415 90 - 1 CAACAUUUCAGAACUGAGAGCCCGAGAGGUCUUCGGAUCGGAAUGGAAUCUAGUCGGGUGAUGAGAGCAGAGGCUGUGUUGCCAAAGGGA---------------------------- ((((((.......((.(..((((((..((((....))))(((......)))..))))))..).))(((....)))))))))((....)).---------------------------- ( -26.30) >DroYak_CAF1 5477 107 - 1 CAGCAUUUCAGAAUCGAGAGUCCGAGAGGCUUUCGGAUCGGCAUGGGAUCUGGUCGGACGACGAGGCCAGAGGCUGUGUGGCCAAAGGGAUUGAUCAUCGGCCGAG-----------A .....((((.((.(((((((.((....))))))))).)).((((((..(((((((.........)))))))..))))))((((...((......))...)))))))-----------) ( -39.80) >consensus CAGCAUUUCAGAAUUGAGAGUCCGAGAGGUUUUCGGAUCGGAAUGGGAUCUAGUCGAGCGACAAGUCCAGAGGCUGUGUGGCCAAAGGGAUUGAU_________AA___________G ...((((((.((.(((((((.((....))))))))).)))))))).(((((.(((....))).........(((......)))....))))).......................... (-24.50 = -24.88 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:23 2006