Locus 1837

Sequence ID X_DroMel_CAF1
Location 5,077,687 – 5,077,803
Length 116
Max. P 0.755771
window2990

overview

Window 0

Location 5,077,687 – 5,077,803
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 94.91
Mean single sequence MFE -26.40
Consensus MFE -23.08
Energy contribution -23.72
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.35
Structure conservation index 0.87
SVM decision value 0.49
SVM RNA-class probability 0.755771
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5077687 116 + 22224390
AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGUACUCUUGAGUGAAGAGUUUUUAAAACGAAAAGUGAAAUAUAGAAAGUACUAGAUAUGGGUUAUACA
.((((..((((.(.((((...((((.(((((((....))))))).)))).((((((.....))))))........................)))).).)))).....))))..... ( -27.20)
>DroSec_CAF1 35211 116 + 1
AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUAAAGAGUUUUUAAAACGAAAAGUGAAAUAUAGAAAGUACUAGAUAUGGGUUAUACC
.((((..((((.(.((((...((((.(((((((....))))))).)))).((((((.....))))))........................)))).).)))).....))))..... ( -27.90)
>DroSim_CAF1 35472 116 + 1
AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAGAGUUUUUAAAACGAAAAGUGAAAUAUAGCAAGUACUAGAUAUGGGUUAUACC
.((((..((((...((((...((((.(((((((....))))))).)))).((((((.....)))))).........)))).((........)).....)))).....))))..... ( -25.10)
>DroEre_CAF1 41177 116 + 1
AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGGCUGCACUCUUGAGUGAAAAGUUUUGAAAACGCAAAGUGAAAUAUAGAAAGCACUAGAUAUGGGGUAUACU
..(((..(((...((((((..((((.(((((((....))))))).))))((((....)))).....(((((......))))))))))).)))......(((....))))))..... ( -25.20)
>DroYak_CAF1 43036 116 + 1
AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAAAGUUUUCAGAACGAAAAGUGAAAUAUAGAAAGUACUAGAUAUGGGGUACACU
.......(((...((((((..((((.(((((((....))))))).))))((((....)))).....(((((.....))))).)))))).)))...(((((........)))))... ( -26.60)
>consensus
AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAGAGUUUUUAAAACGAAAAGUGAAAUAUAGAAAGUACUAGAUAUGGGUUAUACC
...(((.((((.(.((((...((((.(((((((....))))))).)))).((((((.....))))))........................)))).).))))...)))........ (-23.08 = -23.72 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:56 2006