Locus 1836

Sequence ID X_DroMel_CAF1
Location 5,074,410 – 5,074,510
Length 100
Max. P 0.942240
window2989

overview

Window 9

Location 5,074,410 – 5,074,510
Length 100
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.41
Mean single sequence MFE -31.13
Consensus MFE -22.92
Energy contribution -22.78
Covariance contribution -0.13
Combinations/Pair 1.37
Mean z-score -1.95
Structure conservation index 0.74
SVM decision value 1.32
SVM RNA-class probability 0.942240
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5074410 100 + 22224390
-UAUUUCCCUAUC-GUUAGCUCCAAGCUGCUGGGCUUCAUCUGUGAACUGGUGGAAACAUCGCAGACGGUGCAGCAGCAUAUGAUCCAGAACCGGGGAUUCC
-....(((((...-(((.(.((...(((((((.(((...(((((((.....((....))))))))).))).)))))))....)).)...))).))))).... ( -33.90)
>DroVir_CAF1 47845 90 + 1
-----------UU-UACAGCUCGAAGCUGUUGGGCUUCAUUUGCGAACUGGUGGAGACAUCACAGACGGUGCAACAGCACAUGAUACAGAAUCGGGGCUUUC
-----------..-...(((((...(((((((.(((...((((.....(((((....))))))))).))).)))))))...((((.....)))))))))... ( -29.10)
>DroGri_CAF1 17461 91 + 1
-----------UUUUUAAGCUCGAAACUGUUGGGCUUCAUCUGCGAACUAGUGGAAACAUCGCAGACGGUGCAACAGCACAUGAUACAGAAUCGUGGCUUCU
-----------.....((((......((((((.(((...(((((((.....((....))))))))).))).))))))..((((((.....)))))))))).. ( -31.40)
>DroEre_CAF1 37996 101 + 1
UCAUUCCCAUUUU-GAUAGCUCCAAGCUGCUGGGCUUCAUCUGUGAACUGGUGGAAACUUCGCAGACGGUGCAGCAGCACAUGAUCCAGAACCGGGGAUUCC
..((((((.((((-(....(.....(((((((.(((...(((((((...(((....)))))))))).))).)))))))....)...)))))..))))))... ( -36.00)
>DroWil_CAF1 12673 94 + 1
-----GUC--GUU-UACAGCUCCAAAUUGUUGGGCUUCAUCUGUGAGCUAGUGGAAACAUCACAGACAGUGCAGCAGCAUAUGAUCCAGAAUCGUGGAUUUU
-----((.--(((-((((((.((((....)))))))...(((((((.....((....)))))))))..))).))).))....((((((......)))))).. ( -25.40)
>DroMoj_CAF1 37699 98 + 1
---UUUCUCGCUU-CACAGUUCAAAGCUCUUGGGCUUCAUCUGCGAACUGGUGGAGACAUCGCAGACUGUGCAACAGCACAUGAUACAGAAUCGAGGCUUCC
---..(((((.((-(..(((((((.....)))))))((((((((((.....((....))))))))).(((((....))))))))....))).)))))..... ( -31.00)
>consensus
______CC___UU_UACAGCUCCAAGCUGUUGGGCUUCAUCUGCGAACUGGUGGAAACAUCGCAGACGGUGCAACAGCACAUGAUACAGAAUCGGGGAUUCC
.........................(((((((.(((...(((((((.....((....))))))))).))).)))))))........................ (-22.92 = -22.78 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:55 2006