| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,070,433 – 5,070,524 |
| Length | 91 |
| Max. P | 0.652829 |
| Location | 5,070,433 – 5,070,524 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 71.77 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -13.01 |
| Energy contribution | -12.95 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5070433 91 - 22224390 GUGAUUGUCCGGCAGAUUCAGAUAGCACUCGUUGUCGAAACGGAACUGGGACUGUUUUAU----U-UGUA-------------U-----UUUCACAGUGUGUUUUUCAGCACAU ((((..((...((((((...((((((....))))))(((((((........)))))))))----)-))))-------------)-----..)))).((((((......)))))) ( -23.40) >DroPse_CAF1 31108 101 - 1 GUGAUUGUCCGGCAGAUUCAGAUAGCAUUCGUUAUCGAAGCGGAACUGCGACUGUUUUUU----U--GUUGUUUUUUUUUUU-U-----GUCGACAGUCGAU-AUUCGAUUUUC .((((((((.((((((....((((((....))))))((((..((((.((((........)----)--)).))))..))))))-)-----)))))))))))..-........... ( -26.10) >DroSim_CAF1 28730 78 - 1 GUGAUUGUCCGGCAGAUUCAGAUAGCACUCGUUGUCGAAUCGGAACUGCGACUGUUUUUU----UAUGUA-------------U-----UUUUU-GUUGUG------------- ..(((.((((((..(((((.((((((....)))))))))))....))).))).)))....----......-------------.-----.....-......------------- ( -16.30) >DroEre_CAF1 34216 106 - 1 GUGAUUGUCCGGCAGAUUCAGAUAGCACUCGUUGUCGAAUCGGAACUGCGACUGUUUUUUGAAUUUUGUAUUUUUUUUUGUUAU-----UUUCACAAUGUU---UUUGGCAUAU ((((..((..((((((((((((.((((.((((..((......))...)))).)))).)))))))).............))))))-----..)))).((((.---....)))).. ( -21.01) >DroYak_CAF1 35977 101 - 1 GUGAUUGUCCGGCAGAUUCAGAUAGCACUCGUUGUCGAAUCGGAACUGCGACUGU-------AUUUUGUAGUUUUUUUUUUCAU-----UUUCACAGUGUUU-UUUUGGCAUAU ((((..((......(((((.((((((....)))))))))))((((((((((....-------...)))))))))).......))-----..)))).(((((.-....))))).. ( -25.00) >DroPer_CAF1 30910 106 - 1 GUGAUUGUCCGGCAGAUUCAGAUAGCAUUCGUUAUCGAAGCGGAACUGCGACUGUUUUUU----U--GUUGUUUUUUUUUUG-UCGACAGUCGACAGUCGAU-AUUCGAUAUUC .(((.((((..((((.(((.....((.((((....)))))).)))))))(((((((...(----(--((((...........-.))))))..))))))))))-).)))...... ( -30.60) >consensus GUGAUUGUCCGGCAGAUUCAGAUAGCACUCGUUGUCGAAUCGGAACUGCGACUGUUUUUU____U_UGUAGUUUUUUUUUU__U_____UUUCACAGUGUAU__UUCGGCAUAU ......(((..((((.(((.((((((....))))))......)))))))))).............................................................. (-13.01 = -12.95 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:53 2006