| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,066,464 – 5,066,581 |
| Length | 117 |
| Max. P | 0.650448 |
| Location | 5,066,464 – 5,066,581 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.12 |
| Mean single sequence MFE | -37.72 |
| Consensus MFE | -27.42 |
| Energy contribution | -27.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5066464 117 + 22224390 ---AACCUUCUUUCAGACCUGCUCAUCGAGAUGUUGGGCGUGCUGGCCAGCUAUAGCAUAACGGUGAAGGAGCUAAAGCUCCUCUUCGGUACGAUGAAGGCCACCAAUGGCAAGUGGCCG ---........((((.(((...((((((..((((((.....(((....)))..))))))..))))))((((((....))))))....)))....))))((((((.........)))))). ( -40.80) >DroVir_CAF1 25122 113 + 1 -----CC--AUUACAGAUCUGCUCAUCGAGAUGCUGGGUGUAUUGGCCAGCUAUAGCAUAACCGUUAAAGAGCUGAAACUUCUAUUUGGCACGAUGAAGGCCAACAAUGGCAAAUGGCCG -----((--(((..........((((((...(((..((((.......(((((.((((......))))...))))).......))))..)))))))))..((((....)))).)))))... ( -31.54) >DroGri_CAF1 5433 113 + 1 -----GU--GUUGCAGACUUGCUCAUCGAGAUGUUGGGCGUUUUGGCGAGCUACAGCAUAACGGUUAAGGAGCUGAAACUGCUCUUUGGCACGAUGAAGGCCAACAAUGGCAAAUGGCCG -----((--((((.((.(((((....(((((((.....)))))))))))))).))))))..((((((((((((.......)))))))))).)).....(((((...........))))). ( -40.90) >DroWil_CAF1 5817 120 + 1 UUUCCUCUAUUUACAGAUUUGCUUAUCGAAAUGUUGGGCGUAUUGGCCAGCUAUAGCAUAACGGUUAAAGAGUUAAAAUUGCUUUUUGGCACCAUGAAGGCCAAUAAUGCCAAAUGGCCG ......((((((...(((......))).........((((((((((((.((....))......((((((((((.......))))))))))........))))))).)))))))))))... ( -33.60) >DroMoj_CAF1 24302 115 + 1 -----CCAUGUUGCAGAUCUGCUCAUCGAGAUGCUGGGCGUAUUGGCCAGCUAUAGCAUAACGGUCAAGGAGCUGAAGCUGCUCUUUGGCACGAUGAAGGCCAACAAUGGCAAAUGGCCG -----.......(((....)))((((((....(((((.(.....).)))))............((((((((((.......)))))))))).)))))).(((((...........))))). ( -42.90) >DroAna_CAF1 3434 113 + 1 -------CUGUUUCAGAUCUCCUCAUCGAAAUGCUGGGUGUCCUGGCCAGCUACAGCAUAACGGUAAAGGAGCUCAAGCUCCUCUUCGGCACCAUGAAGGCCAGCAACGGCAAGUGGCCG -------..(((((.(((......))))))))(((((.(.((.(((...((....))....(((...((((((....))))))..)))...))).)).).)))))..((((.....)))) ( -36.60) >consensus _____CC_UGUUACAGAUCUGCUCAUCGAGAUGCUGGGCGUAUUGGCCAGCUAUAGCAUAACGGUUAAGGAGCUGAAACUGCUCUUUGGCACGAUGAAGGCCAACAAUGGCAAAUGGCCG ......................((((((..(((((((((..........))).))))))....(((((((((.........))))))))).)))))).(((((...........))))). (-27.42 = -27.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:50 2006