Locus 1831

Sequence ID X_DroMel_CAF1
Location 5,066,295 – 5,066,407
Length 112
Max. P 0.839517
window2982

overview

Window 2

Location 5,066,295 – 5,066,407
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 77.45
Mean single sequence MFE -21.82
Consensus MFE -6.28
Energy contribution -7.89
Covariance contribution 1.61
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.29
SVM decision value 0.75
SVM RNA-class probability 0.839517
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5066295 112 + 22224390
AUUAUUUAAUACUCCCCUAUGAAUGUCCAUCACUUUGAUGGCUAAUGAAGAGCAUUAGCAGCACUUAUUACGGCAUUUCAUGUGCCAUAAACUCCUAAACAUGGAUUGCAUA
.................((((...((((((.....((...(((((((.....)))))))..))........(((((.....)))))..............))))))..)))) ( -24.70)
>DroSec_CAF1 24112 100 + 1
--UAUUUAAUACUCCCCUAUGAAUGUCCAUCACUUUGAUGGCUAAUGAAGAGCAUUAGCAGCACUUC---------UUCAAGUGCCAUAAACUCCUG-ACAUGGAUUGCAUA
--...............((((...((((((((.....((((((((((.....))))))).((((((.---------...))))))))).......))-)..)))))..)))) ( -23.50)
>DroSim_CAF1 24317 100 + 1
--UAUUUAAUACUCCCCUAUGAAUGUCCAUCACUUUGAUGGCUAAUGAAGAGCAUUAGCAGCACUUC---------UUCAAGUGCCAUAAACUCCUG-ACAUGGAUUGCAUA
--...............((((...((((((((.....((((((((((.....))))))).((((((.---------...))))))))).......))-)..)))))..)))) ( -23.50)
>DroEre_CAF1 30208 92 + 1
--CAUUUAAUACUCU--UAUAA---------------AUGACUAAUGAAGAGGAUUAACAGUACUUAUUACGGCAUUUCAAGAGUCAUAAACUUCUG-AAAUGGAUUGCAUA
--...(((((.((((--(....---------------((.....)).))))).)))))...............(((((((..(((.....)))..))-)))))......... ( -15.30)
>DroYak_CAF1 32055 107 + 1
--UAUUUAACACUCG--AACAAAUAUCCAUCACUUGAAUGGGUAAUAAAGAGGAUUAGCAGCACUCAUUACAGCAAUUCAAGAGUCAUAAACUUCUG-ACAUGGAUUGCAUA
--...((((..(((.--......((((((((....).))))))).....)))..))))..............((((((((...((((........))-)).))))))))... ( -22.10)
>consensus
__UAUUUAAUACUCCCCUAUGAAUGUCCAUCACUUUGAUGGCUAAUGAAGAGCAUUAGCAGCACUUAUUAC_GCA_UUCAAGUGCCAUAAACUCCUG_ACAUGGAUUGCAUA
......((((.(((............(((((.....)))))........))).))))(((((((((.............)))))).......(((.......))).)))... ( -6.28 =  -7.89 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:49 2006