Locus 1827

Sequence ID X_DroMel_CAF1
Location 5,048,664 – 5,048,782
Length 118
Max. P 0.857404
window2976

overview

Window 6

Location 5,048,664 – 5,048,782
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 85.12
Mean single sequence MFE -31.63
Consensus MFE -23.77
Energy contribution -23.99
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -2.43
Structure conservation index 0.75
SVM decision value 0.81
SVM RNA-class probability 0.857404
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5048664 118 - 22224390
UUACAUGGAGGAAAAUGUUCAUGGCAGAUGUUAGCCGAUAAUCUGUGAUUUGCCGCUUACUUUACCGCGAUUUUCGGUUGUAACUGCCGCAAGUAAGUGAAGUAGGUAAAACUAAGUA
.(((.(((..............(((((((..(((........)))..)))))))(((((((((((....((((.((((.......)))).))))..)))))))))))....))).))) ( -30.70)
>DroSec_CAF1 7468 100 - 1
UUACAUGG---AAAAUGUUCAUGGCAGAUGUUAGCCGAAAAUCUGGGAUUUGCCGCUUACUUUACCGCGAUUUUCAGUUGUAGCU-------------GAAGUAGGUAU--GUAAGUA
....((((---(.....)))))(((((((.((((........)))).)))))))((((((..((((.....(((((((....)))-------------))))..)))).--)))))). ( -30.90)
>DroSim_CAF1 7439 100 - 1
UUACAUGG---AAAAUGUUCAUGGCAGAUGUUAGCCGAAAAUCUGGGAUUUGCCGCUUACUUUACCGCGAUUUUCAGUUGUAGCU-------------GAAGUAGGUAU--GUAAGCA
....((((---(.....)))))(((((((.((((........)))).)))))))((((((..((((.....(((((((....)))-------------))))..)))).--)))))). ( -33.30)
>consensus
UUACAUGG___AAAAUGUUCAUGGCAGAUGUUAGCCGAAAAUCUGGGAUUUGCCGCUUACUUUACCGCGAUUUUCAGUUGUAGCU_____________GAAGUAGGUAU__GUAAGUA
..((((........))))....(((((((.((((........)))).)))))))((((((..(((((((((.....))))).(((...............))).))))...)))))). (-23.77 = -23.99 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:43 2006