| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,045,005 – 5,045,098 |
| Length | 93 |
| Max. P | 0.521515 |
| Location | 5,045,005 – 5,045,098 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 86.10 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -20.33 |
| Energy contribution | -20.53 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5045005 93 + 22224390 GCAUAGGCGUAAUCAAGGCUCUUGGGGGAUUGCCAAUGGCUUUGAAAAUGUGGCCAAAAAGAAAAAGGAAGUACGCAGGUUGGCGAGCAAA---CG ((....((((..((((((((.((((.......)))).))))))))..)))).(((((.........(......).....)))))..))...---.. ( -24.24) >DroSec_CAF1 3914 92 + 1 GCAUAGGCGUAAUCAAGGCUCUUGGGGGAUUGCCAAUGGCUUUGAAAAUGUGGCCAAAAGGAAAAAGGAAGUACGUAGAUUGGCGCGCA-A---CG ......((((..((((((((.((((.......)))).)))))))).......(((((......................))))))))).-.---.. ( -24.55) >DroSim_CAF1 3913 92 + 1 GCAUAGGCGUAAUCAAGGCUCUUGGGGGAUUGCCAAUGGCUUUGAAAAUGUGGCCAAAAGGAAAAAGGAAGUACGUAGGUUGGCGCGCA-A---CG ......((((..((((((((.((((.......)))).)))))))).......(((((.........(......).....))))))))).-.---.. ( -25.24) >DroEre_CAF1 9019 88 + 1 GCAUAGGCGUAAUCAAGGUUCUUGGGGGAUUGCCAAUAGCUGUGAAAAUGUGAGCAAAAAA----ACCUAGUACAGAGGUUGGCGAGCA-A---CG ......((....(((((...)))))....((((((((..(((((.....((..........----))....)))))..)))))))))).-.---.. ( -20.60) >DroYak_CAF1 9276 94 + 1 GCAUAGGCGUAAUCAAGGUUCUUGGGGAAUUGCCAAUGGCUUUGAAAAUGUGGCCAAAAAA-GUAACGUGGAACAGAGGUUGGCAAGCA-ACAACG ((....((((..(((((((..((((.......))))..)))))))..)))).(((((....-((........)).....)))))..)).-...... ( -23.20) >consensus GCAUAGGCGUAAUCAAGGCUCUUGGGGGAUUGCCAAUGGCUUUGAAAAUGUGGCCAAAAAGAAAAAGGAAGUACGGAGGUUGGCGAGCA_A___CG ((....((((..((((((((.((((.......)))).))))))))..)))).(((((......................)))))..))........ (-20.33 = -20.53 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:36 2006