Locus 1823

Sequence ID X_DroMel_CAF1
Location 5,043,289 – 5,043,398
Length 109
Max. P 0.813313
window2967

overview

Window 7

Location 5,043,289 – 5,043,398
Length 109
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 80.96
Mean single sequence MFE -31.26
Consensus MFE -13.06
Energy contribution -13.10
Covariance contribution 0.04
Combinations/Pair 1.27
Mean z-score -2.48
Structure conservation index 0.42
SVM decision value 0.66
SVM RNA-class probability 0.813313
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5043289 109 - 22224390
AGUGUAUAGACCAGUGGACAGGAUGCUUGGAAGGGGGAGGGGAGG-------GGACUCACUCCUCUGC-ACUGG-AAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCAUAAAA
.(.(((((((((((((..((((...))))...(((((((..(((.-------...))).))))))).)-)))))-....((((.......))))..........))))))))...... ( -34.50)
>DroPse_CAF1 2345 97 - 1
AGUACAUAGUCGA----------GGCGGGGCAGUGGAAGGGCAGG-------GG----GCUGUUCUGCCACGGGAAAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCGUAAAA
..(((....(((.----------(((((((((((...........-------..----))))))))))).)))............(((((((............))))))).)))... ( -24.52)
>DroSec_CAF1 2159 116 - 1
AGUGUAUAGACCAGUGGACAGGAGGCUUGGAAGGGGGAGGGGGGAGUUGGAAGGGCUCACUCCUCUGC-ACUGG-AAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCAUAAAA
.(.(((((((((((((..((((...))))......(((((((.(((((.....))))).))))))).)-)))))-....((((.......))))..........))))))))...... ( -32.50)
>DroSim_CAF1 2255 116 - 1
AGUGUAUAGACCAGUGGACAGGAGGCUUGGAAGGGGGAGGGGGGAGUUGGAAGGGCUCACUCCUCUGC-ACUGG-AAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCAUAAAA
.(.(((((((((((((..((((...))))......(((((((.(((((.....))))).))))))).)-)))))-....((((.......))))..........))))))))...... ( -32.50)
>DroYak_CAF1 7155 116 - 1
AGUGUAUAGUCCAGUGGACAGGAGGCUUGGCAGGGUCGAAGGGGAAUGGGAAGGACUCACUCCUCUGC-ACUGG-AAAUUGUUCAGCAUAGACAUUAAAAUAAAUGUAUGCCAUAAAA
..((.(((.(((((((.......(((((....)))))..((((((.((((.....)))).)))))).)-)))))-)...))).))((((..(((((......)))))))))....... ( -32.30)
>consensus
AGUGUAUAGACCAGUGGACAGGAGGCUUGGAAGGGGGAGGGGGGA_U_GGAAGGACUCACUCCUCUGC_ACUGG_AAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCAUAAAA
..........(((((..........(((....)))..(((((((...............)))))))...)))))...........(((((((............)))))))....... (-13.06 = -13.10 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:36 2006