Locus 1822

Sequence ID X_DroMel_CAF1
Location 5,043,162 – 5,043,257
Length 95
Max. P 0.833024
window2966

overview

Window 6

Location 5,043,162 – 5,043,257
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 93.36
Mean single sequence MFE -23.64
Consensus MFE -20.68
Energy contribution -20.76
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.40
Structure conservation index 0.87
SVM decision value 0.72
SVM RNA-class probability 0.833024
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5043162 95 - 22224390
AUGUGUAUAAACACUGGGUGGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAAGUUUUCAGCUUGCCCCCG
..((((....)))).(((.((.........(((..(((....)))..)))((((((((((.(((((....))))).))))))))))...))))). ( -27.30)
>DroSec_CAF1 2028 95 - 1
AUGUGUAUAAACACUGGGUAGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAAGUUUUCAGUUUGCCCCUG
..((((....)))).((((((.........(((..(((....)))..)))((((((((((.(((((....))))).))))))))))))))))... ( -24.40)
>DroSim_CAF1 2122 95 - 1
AUGUGUAUAAACACUGGGUAGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAAGUUUUCAGUUUGCCCCUG
..((((....)))).((((((.........(((..(((....)))..)))((((((((((.(((((....))))).))))))))))))))))... ( -24.40)
>DroEre_CAF1 7201 94 - 1
-UAUACAUAAACACUGGGUAGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAACUUUUCAGUUUGCCCCUG
-..............(((((((((.(..(((((..(((.((...(((((((.(....).))))).)))))).)..)))))..))))))))))... ( -22.20)
>DroYak_CAF1 7046 89 - 1
------AUAAACACUGGGUAGAGUUGGGAAGUUGACAGAGCACAGAAAACGCUGAAAAUUGUUUAUCACCAUGAAAAGUUUUCAGUUUGCCCCUG
------.........((((((.((..(....)..))..............((((((((((.(((((....))))).))))))))))))))))... ( -19.90)
>consensus
AUGUGUAUAAACACUGGGUAGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAAGUUUUCAGUUUGCCCCUG
...............((((((.........(((..(((....)))..)))((((((((((.(((((....))))).))))))))))))))))... (-20.68 = -20.76 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:35 2006