Locus 1819

Sequence ID X_DroMel_CAF1
Location 5,041,036 – 5,041,131
Length 95
Max. P 0.507623
window2962

overview

Window 2

Location 5,041,036 – 5,041,131
Length 95
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 93.03
Mean single sequence MFE -35.87
Consensus MFE -28.35
Energy contribution -28.47
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.16
Structure conservation index 0.79
SVM decision value -0.05
SVM RNA-class probability 0.507623
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5041036 95 - 22224390
GUCUGCAUGGGGAAGCACUUUGCAACUUCCUUGCUGCAAUUGCAAUUGGAGUGGCUGGCUGGUCUUUAUGGCGGCUGCCACUUCGUU-UUGGCACA--
...((((((((((((..........)))))))).))))..(((...(((((((((.(((((.((.....))))))))))))))))..-...)))..-- ( -35.20)
>DroSec_CAF1 1 92 - 1
GUCUGCACGGGGAAGCACUUUGCAACUUCCUUGCUGCAAUUGCAAUUGGAGUGGC----GGGGCUUUAUGGCGGCUGCCACUUCGUUUUUGGCACA--
...((((((((((((..........)))))))).))))..(((...(((((((((----((.(((....)))..)))))))))))......)))..-- ( -35.90)
>DroSim_CAF1 1 93 - 1
GUCUGCACGGGGAAGCACUUUGCAACUUCCUUGCUGCAAUUGCAAUUGGAGUGGC----GGGGCUUUAUGGCGGCUGCCACUUCGUU-UUGGCACAGG
...((((((((((((..........)))))))).))))..(((...(((((((((----((.(((....)))..)))))))))))..-...))).... ( -36.50)
>consensus
GUCUGCACGGGGAAGCACUUUGCAACUUCCUUGCUGCAAUUGCAAUUGGAGUGGC____GGGGCUUUAUGGCGGCUGCCACUUCGUU_UUGGCACA__
...((((((((((((..........)))))))).))))..(((...(((((((((.......(((....)))....)))))))))......))).... (-28.35 = -28.47 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:31 2006