Locus 1817

Sequence ID X_DroMel_CAF1
Location 5,036,140 – 5,036,260
Length 120
Max. P 0.934954
window2960

overview

Window 0

Location 5,036,140 – 5,036,260
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.52
Mean single sequence MFE -32.97
Consensus MFE -29.14
Energy contribution -29.03
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -2.89
Structure conservation index 0.88
SVM decision value 1.24
SVM RNA-class probability 0.934954
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5036140 120 + 22224390
ACGACAUCAUCAAUUCCAAAAUGUUGACGUGAGUGGGUGGCACUGUAAAAAUUGUGGGGGCUGGCUACUUGAUGAAAGCCAUCUUGAAAAGAUGAUGUCAAUAAAAACAAAAAUCACCGA
..(((((((((..(((......(((..(((((((((.((((.(..((.....))..)..)))).)))))).)))..)))......)))..)))))))))..................... ( -31.70)
>DroSec_CAF1 101690 117 + 1
UCGACAUCAUCAAUUCCAAAAUGUUGACGUGAGUGGGCGGCACUGCAAAAAUUGUGGGGUCUGGCUACUUG---AAAGCCAUCUUUAAAAGAUGAUGUCAAUAAAAACAAAAAUCACCGA
..(((((((((...........(((.((....)).)))(((.(..((.....))..).)))(((((.....---..))))).........)))))))))..................... ( -33.60)
>DroSim_CAF1 32838 117 + 1
UCGACAUCAUCAAUUCCAAAAUGUUGACGUGAGUGGGCGGCACUGCAAAAAUUGUGGGGGCUGGCUACUUG---AAAGCCAUCUUUAAAAGAUGAUGUCAAUAAAAACAAAAAUCACCGA
..(((((((((.........(((....)))((((((.((((.(..((.....))..)..)))).)))))).---................)))))))))..................... ( -33.60)
>consensus
UCGACAUCAUCAAUUCCAAAAUGUUGACGUGAGUGGGCGGCACUGCAAAAAUUGUGGGGGCUGGCUACUUG___AAAGCCAUCUUUAAAAGAUGAUGUCAAUAAAAACAAAAAUCACCGA
..(((((((((.........(((....)))((((((.((((.(..((.....))..)..)))).))))))....................)))))))))..................... (-29.14 = -29.03 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:29 2006