Locus 1816

Sequence ID X_DroMel_CAF1
Location 5,029,350 – 5,029,448
Length 98
Max. P 0.690127
window2959

overview

Window 9

Location 5,029,350 – 5,029,448
Length 98
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -21.85
Consensus MFE -11.19
Energy contribution -11.30
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.84
Structure conservation index 0.51
SVM decision value 0.33
SVM RNA-class probability 0.690127
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5029350 98 - 22224390
ACUGGAAACUUUGCAAAUGAAUGGCAAGGCAUUGGAAAUAAUGAGCCGUAUUUACAUUUCAAAGCGCUCGCACA-GAGCGAGAGCUGU-AAAAGUUUUUA
..((((((((((((......(((((....(((((....))))).))))).............(((.(((((...-..))))).)))))-.)))))))))) ( -27.60)
>DroPse_CAF1 124522 82 - 1
ACUGGAAACUUUGCAAAUGAAUGGCAGGGCAUUGGAAAUAAUGAGCUGUAUUUACAUUUCAAAGCCCACAGACUCGGGCGAG------------------
...(....)((((.(((((....((((..(((((....)))))..)))).....)))))))))((((........))))...------------------ ( -21.50)
>DroWil_CAF1 101451 86 - 1
ACUGAAAACUUUGCAAAUGAAUGGCAAGGCAUUG-AAAUAAUGAGCCGUAUUUACAUUUCAAAGCAUACAAA-----GCGGCA----ACAAAGCAU----
........(((((.(((((.(((((....(((((-...))))).))))).....))))))))))........-----(((...----.)...))..---- ( -13.40)
>DroYak_CAF1 98522 97 - 1
ACUGGAAACUUUGCAAAUGAAUGGCAAGGCAUUGGAAAUAAUGAGCCGUAUUUACAUUUCAAAGCGCUUGCACA-G-GCGAGAGCUGU-AAAAGUUUUUA
..((((((((((((......(((((....(((((....))))).))))).............(((.(((((...-.-))))).)))))-.)))))))))) ( -25.40)
>DroAna_CAF1 93697 85 - 1
ACUGCAAAGUUCGCAAAUGAAUGGCAGGGCAUUGGAAAUAAUGAGCCGUAUUUACAUUUCAAAGCGAGC-----------AGAGCGGACAAAAGUU----
.((((...(((((((((((.(((((....(((((....))))).))))).....)))))....))))))-----------...)))).........---- ( -21.70)
>DroPer_CAF1 116355 82 - 1
ACUGGAAACUUUGCAAAUGAAUGGCAGGGCAUUGGAAAUAAUGAGCUGUAUUUACAUUUCAAAGCCCACAGACUCGGGCGAG------------------
...(....)((((.(((((....((((..(((((....)))))..)))).....)))))))))((((........))))...------------------ ( -21.50)
>consensus
ACUGGAAACUUUGCAAAUGAAUGGCAAGGCAUUGGAAAUAAUGAGCCGUAUUUACAUUUCAAAGCGCACACAC__G_GCGAGA______AAAAGUU____
........(((((.(((((.(((((....(((((....))))).))))).....)))))))))).................................... (-11.19 = -11.30 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:28 2006