| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,025,832 – 5,025,952 |
| Length | 120 |
| Max. P | 0.645688 |
| Location | 5,025,832 – 5,025,952 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.61 |
| Mean single sequence MFE | -43.82 |
| Consensus MFE | -35.33 |
| Energy contribution | -35.63 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5025832 120 - 22224390 CGCGAACUAAAGGAGAUGAUCGAGUAUCGAAAGAAGCACGAGGAGCAAAUGAAGCGCGAGGCCGAGGAGCAGGCCAUCAAAAAGGCCUGUCUGCGCUCCAGUGUCUCGUGCCAAAUCGAA ..(((.........(....(((.((.((....)).)).)))....).......((((((((((..((((((((((........)))))(....)))))).).)))))))))....))).. ( -43.50) >DroSec_CAF1 91691 120 - 1 CGCGAACUGAAGGAGAUGAUCGAGUAUCGAAAGAAGCACGAGGAGCAAAUGAAGCGAGAGGCCGAGGAGCAGGCCAUCAAGAAGGCCUGUCUGCGCUCCAGUGUCUCGUGCCAAAUCGAG ..(((..((.(.(((((..(((.((.((....)).)).)))(((((.......((.....))...(.((((((((........)))))).)).))))))...))))).)..))..))).. ( -42.70) >DroSim_CAF1 20914 120 - 1 CGCGAACUGAAGGAGAUGAUCGAGUAUCGAAAGAAGCACGAGGAGCAAAUGAAGCGCGAGGCCGAGGAGCAGGCCAUCAAGAAGGCCUGUCUGCGCUCCAGUGUCUCCUGCCAAAUCGAG ..(((..((.(((((((..(((.((.((....)).)).)))(((((........(....).....(.((((((((........)))))).)).))))))...)))))))..))..))).. ( -47.30) >DroEre_CAF1 95961 120 - 1 CGCGAGCUGAAGGAGAUGAUCGAGUAUCGAAAGAAGCACGAGGAGCAAAUGAAGCGCGAGGCCGAAGAGCAGGCCAUCAAGAAGGCUUGUCUGCGCUCCAGUGUCUCGUGCCAAAUUGAG ..(((..((.(.(((((..(((.((.((....)).)).)))(((((........(....)((...(((.((((((........))))))))))))))))...))))).)..))..))).. ( -39.00) >DroYak_CAF1 92939 120 - 1 CGCGAACUGAAGGAGAUGAUCGAGUAUCGCAAGAAGCACGAGGAGCAAAUGAAGCGCGAGGCCGAGGAGCAGGCCAUCAAGAAGGCCUGCCUUCGCUCCAGUGUCUCGUGCCAAAUUGAG ..(((..((.(.(((((..(((.((.((....)).)).)))(((((........(....)...((((.(((((((........))))))))))))))))...))))).)..))..))).. ( -46.20) >DroAna_CAF1 90198 120 - 1 CGCGAGCUGAAGGAGAUGAUCGAGUACCGGGCUAAGCUAGAGGAGCAGCUGAAGAAGGAGGCCGAGGAGCAGGCCCAGAAGAAGGCCUGCCUCCGCACCAGCGUCGCCUGCCAGAUCGAG ..(((.(((.(((.((((.(((.((.((...((.((((........))))..))..))..)))))((((((((((........)))))).)))).......)))).)))..))).))).. ( -44.20) >consensus CGCGAACUGAAGGAGAUGAUCGAGUAUCGAAAGAAGCACGAGGAGCAAAUGAAGCGCGAGGCCGAGGAGCAGGCCAUCAAGAAGGCCUGUCUGCGCUCCAGUGUCUCGUGCCAAAUCGAG ..(((..((.(.((((((.(((.((.((....)).)).)))(((((.......((.....)).(.((.(((((((........))))))))).))))))..)))))).)..))..))).. (-35.33 = -35.63 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:27 2006