| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 640,862 – 640,965 |
| Length | 103 |
| Max. P | 0.730463 |
| Location | 640,862 – 640,965 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 98.71 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -28.37 |
| Energy contribution | -28.37 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 640862 103 + 22224390 GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCCCCA ((((........))))......(((......(((.(((...)))))).(((.(((..(((.......)))..)))...((((.....))))..))).)))... ( -29.40) >DroSec_CAF1 6057 103 + 1 GCCGAAACACUGCGUCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA ((((........(((....(((.(((((...((....))...))))).....(((..(((.......)))..)))...)))....))).......)))).... ( -28.26) >DroSim_CAF1 8105 103 + 1 GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA ((((......((((....)....(((((...((....))...))))).))).(((..(((.......)))..)))...((((.....))))....)))).... ( -29.50) >consensus GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA ((((......((((....)....(((((...((....))...))))).))).(((..(((.......)))..)))...((((.....))))....)))).... (-28.37 = -28.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:16 2006