Locus 1808

Sequence ID X_DroMel_CAF1
Location 5,013,297 – 5,013,387
Length 90
Max. P 0.794955
window2946

overview

Window 6

Location 5,013,297 – 5,013,387
Length 90
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 79.73
Mean single sequence MFE -19.20
Consensus MFE -12.44
Energy contribution -13.33
Covariance contribution 0.89
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.65
SVM decision value 0.60
SVM RNA-class probability 0.794955
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5013297 90 + 22224390
CCUCUUGGAGAUGGAGCAACCC-------CAGCCCACAGCUUCGUUUUAUUUCUUUGCUUUUUACUUGAUAUACUCGGGGUUUUCCUCUCCGUUUUU
......(((((.((((.(((((-------((((.....)))..........................((.....)))))))))))))))))...... ( -24.00)
>DroEre_CAF1 83778 89 + 1
CCUCUUGCAGAUGGAGCAUCGCAAUCCAC--------AGCUUCGUUUUCUUUCUUUGCUUUUUACUUGAUAUACUCGGGGGCUUACUCUCCGUUUUU
......(((((((((((............--------.)))))))).........))).................((((((.....))))))..... ( -14.12)
>DroYak_CAF1 80944 97 + 1
UCUCUUGGAGAUGGAGCAUCCCAUUCAACCAUCCUAAAGCUUCGUGUUUUUUCUUUGCUUUUUACUUGAUAUACUCGGGGUUUUUCACUCCGCUUUU
......((((.(((((.(((((.............(((((................)))))......((.....))))))).)))))))))...... ( -19.49)
>consensus
CCUCUUGGAGAUGGAGCAUCCCA_UC_ACCA_CC_A_AGCUUCGUUUUAUUUCUUUGCUUUUUACUUGAUAUACUCGGGGUUUUACUCUCCGUUUUU
......(((((((((((.....................)))))))))))..........................(((((.......)))))..... (-12.44 = -13.33 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:16 2006