Locus 1806

Sequence ID X_DroMel_CAF1
Location 5,001,964 – 5,002,057
Length 93
Max. P 0.818834
window2944

overview

Window 4

Location 5,001,964 – 5,002,057
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 95.69
Mean single sequence MFE -24.67
Consensus MFE -20.89
Energy contribution -20.95
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -2.23
Structure conservation index 0.85
SVM decision value 0.67
SVM RNA-class probability 0.818834
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5001964 93 - 22224390
GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGGCGUCAAGGCAAAGAAGGGGGUUUGUUUUAGUGAGCUGCUUCUUGGUUGUUAAC
............((((.(....).)))).(((((((((..((..((((((((........))))))))..)).))))).)))).......... ( -25.70)
>DroSec_CAF1 68476 93 - 1
GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGGCGUCAAGGCAAAAGAGGGGGUUUGUUUUAGUGAGCUGCUUCUUGGUUGUUAAC
............((((.(....).))))....((((((.((......))..((((((.((((..(....)..)))).)))))).))))))... ( -26.40)
>DroEre_CAF1 72625 92 - 1
GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGCCGUCAGGGCAAA-GAGGGGGUUUGUUUUAGUGAGCUGGUUCUUGGUUGUUAAC
............((((.(....).))))....(((((((((.....))).((-(((..((((..(....)..))))..))))).))))))... ( -25.30)
>DroYak_CAF1 69885 92 - 1
GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGGCGUCAAGGCAAA-GAGGGGGUUUGUUUUAGUGUACUGGUUCUUGGUUGUUAAC
............((((.(....).)))).((((((....(((..((((((((-.......))))))))..)))....)))))).......... ( -21.30)
>consensus
GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGGCGUCAAGGCAAA_GAGGGGGUUUGUUUUAGUGAGCUGCUUCUUGGUUGUUAAC
............((((.(....).)))).(((((((((..((..((((((((........))))))))..)).)))).))))).......... (-20.89 = -20.95 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:14 2006