Locus 1805

Sequence ID X_DroMel_CAF1
Location 5,000,407 – 5,000,497
Length 90
Max. P 0.909678
window2943

overview

Window 3

Location 5,000,407 – 5,000,497
Length 90
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 74.28
Mean single sequence MFE -14.44
Consensus MFE -6.36
Energy contribution -5.84
Covariance contribution -0.52
Combinations/Pair 1.39
Mean z-score -2.04
Structure conservation index 0.44
SVM decision value 1.07
SVM RNA-class probability 0.909678
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5000407 90 + 22224390
UCAA-AACAAUAUAAAUGGACAAACACGUACACAUAACACAUAACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGCAAAUA-CA----------
....-..((((.((((((.((......))............((((((((......)))))))).))))))))))..((....)).....-..---------- ( -13.70)
>DroSec_CAF1 66968 83 + 1
UCAA-AACAAUAUAAAUGGACAAACACGUACACAU-------AACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGCAAAUA-CA----------
....-..((((.((((((.((......)).....(-------(((((((......)))))))).))))))))))..((....)).....-..---------- ( -13.70)
>DroEre_CAF1 71200 84 + 1
UCAAAAACAAUAUAAAUGGACAAACACGUACACAU-------AACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGCGAAAA-CA----------
((.....((((.((((((.((......)).....(-------(((((((......)))))))).))))))))))..((....))))...-..---------- ( -13.80)
>DroYak_CAF1 68482 83 + 1
UCAA-AACAAUAUAAAUGGGCAAACACGUACACAU-------AACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGUAAAUA-CA----------
....-..((((.((((((.((......)).....(-------(((((((......)))))))).))))))))))...............-..---------- ( -12.70)
>DroPer_CAF1 82154 91 + 1
UCCG-UACA--AUAAAUGGUACAGUGUGUGUGUGU--------GUGUGUUUGUUCAUGUGUGAUUAUUUAAUUGAAAAUGAGACAAAAAACAACACUCAAUG
...(-(((.--.......))))....((.((((.(--------((...(((((((((...(((((....)))))...)))).)))))..))))))).))... ( -18.30)
>consensus
UCAA_AACAAUAUAAAUGGACAAACACGUACACAU_______AACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGCAAAUA_CA__________
.......((((.((((((.........(....).........(((((((......)))))))..))))))))))............................ ( -6.36 =  -5.84 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:14 2006