Locus 1804

Sequence ID X_DroMel_CAF1
Location 4,998,285 – 4,998,383
Length 98
Max. P 0.506547
window2942

overview

Window 2

Location 4,998,285 – 4,998,383
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 80.61
Mean single sequence MFE -25.53
Consensus MFE -17.03
Energy contribution -16.37
Covariance contribution -0.66
Combinations/Pair 1.27
Mean z-score -1.57
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.506547
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4998285 98 - 22224390
AAGUGCUUUAACGUAUCUCAAAGGAUUCUACGCACAUCCUGACAGGUGGCGCCACCUAGCGCUUUUAAGAUGCGCAAGCUUUGCUAUAAACCGAACUG
.(((((((...(((((((.(((((......(((.(.....)..(((((....))))).)))))))).))))))).))))...)))............. ( -22.70)
>DroSec_CAF1 64963 98 - 1
AAGUAUUUUAACGAGUCUCAAAGGAUUCUACGCAUGUCCUGACAGGUGGCGCCACCUAGCGCUUUUAAGAUGCGCAAGCUUUGCUAUAAACCGAAUUU
..(((((((((.((((((....))))))..(((..((....))(((((....))))).)))...)))))))))(((.....))).............. ( -24.80)
>DroYak_CAF1 66472 98 - 1
AUAUAUUAUAGGGAGCAUCCAUUGGUUCUAUGUAUGUCCUGAUAGGUGGCGCCACCAAGCACUUUUAACAAGUGCAAGCUUUCCUAUAAACCGAACUA
.....(((((((((((......((((.((((.(((......))).)))).))))....((((((.....))))))..)).)))))))))......... ( -29.10)
>consensus
AAGUAUUUUAACGAGUCUCAAAGGAUUCUACGCAUGUCCUGACAGGUGGCGCCACCUAGCGCUUUUAAGAUGCGCAAGCUUUGCUAUAAACCGAACUA
............(((((......)))))...((...........((((....))))..((((.........))))..))................... (-17.03 = -16.37 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:13 2006